Variant report

Variant	rs74025202
Chromosome Location	chr15:77714162-77714163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr15:77711260-77714321	K562	blood:	n/a	n/a
2	MAZ	chr15:77710652-77714451	IMR90	lung:	n/a	chr15:77711944-77711954 chr15:77712740-77712750
3	POLR2A	chr15:77712247-77714403	GM12891	blood:	n/a	n/a
4	EP300	chr15:77712801-77714220	K562	blood:	n/a	chr15:77712859-77712868 chr15:77713926-77713935 chr15:77712932-77712946 chr15:77713477-77713484
5	MXI1	chr15:77710812-77714549	SK-N-SH	brain:	n/a	n/a
6	HCFC1	chr15:77710661-77714679	Hela-S3	cervix:	n/a	n/a
7	MYC	chr15:77713998-77714533	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr15:77712200-77714425	MCF10A-Er-Src	breast:	n/a	n/a
9	MXI1	chr15:77710378-77714696	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77712321..77714990-chr15:77817270..77818791,2	MCF-7	breast:
2	chr15:77694098..77696472-chr15:77713805..77715718,2	K562	blood:
3	chr15:77195486..77197689-chr15:77712877..77715018,2	K562	blood:

Variant related genes	Relation type
PEAK1	TF binding region
ENSG00000259362	Chromatin interaction
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55923211	1.00[AFR][1000 genomes]
rs56073412	1.00[AFR][1000 genomes]
rs74025108	1.00[AFR][1000 genomes]
rs74025110	1.00[AFR][1000 genomes]
rs74025111	1.00[AFR][1000 genomes]
rs74025195	1.00[AFR][1000 genomes]
rs74026915	1.00[AFR][1000 genomes]
rs74026924	1.00[AFR][1000 genomes]
rs74026928	1.00[AFR][1000 genomes]
rs74026934	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77710200-77714400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:77710200-77714400	Active TSS	Right Atrium	heart
3	chr15:77710400-77714400	Active TSS	Right Ventricle	heart
4	chr15:77710400-77714400	Active TSS	NHDF-Ad	bronchial
5	chr15:77710400-77714600	Active TSS	NHLF	lung
6	chr15:77710600-77714200	Active TSS	H1 Cell Line	embryonic stem cell
7	chr15:77710600-77714200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:77710600-77714600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77710800-77714200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:77710800-77714200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:77710800-77714200	Active TSS	Fetal Muscle Trunk	muscle
12	chr15:77710800-77714200	Active TSS	Psoas Muscle	Psoas
13	chr15:77710800-77714600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:77711000-77714200	Active TSS	Aorta	Aorta
15	chr15:77711000-77714400	Active TSS	Stomach Smooth Muscle	stomach
16	chr15:77711000-77714800	Active TSS	K562	blood
17	chr15:77711200-77714200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:77711200-77714200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr15:77711200-77714200	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr15:77711200-77714400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:77711200-77714400	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr15:77711200-77714600	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr15:77711200-77714600	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr15:77711200-77714600	Active TSS	Fetal Intestine Large	intestine
25	chr15:77711400-77714200	Active TSS	A549	lung
26	chr15:77711400-77714400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:77711400-77714400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:77711400-77714400	Active TSS	Fetal Intestine Small	intestine
29	chr15:77711400-77714400	Active TSS	HSMM	muscle
30	chr15:77711600-77714200	Active TSS	Brain Germinal Matrix	brain
31	chr15:77711600-77714200	Active TSS	GM12878-XiMat	blood
32	chr15:77711600-77714200	Active TSS	Hela-S3	cervix
33	chr15:77711600-77714600	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr15:77711600-77714600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:77711800-77714400	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr15:77712000-77714600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:77712800-77714200	Active TSS	Stomach Mucosa	stomach
38	chr15:77712800-77714600	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr15:77713000-77714600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:77713200-77714200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr15:77713200-77714200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:77713200-77714400	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr15:77713400-77714200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr15:77713400-77714400	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr15:77713400-77714400	Flanking Active TSS	Fetal Brain Male	brain
46	chr15:77713400-77714400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr15:77713400-77714600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:77713600-77714200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr15:77713600-77714200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr15:77713600-77714200	Flanking Active TSS	Brain Substantia Nigra	brain

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