Variant report

Variant	rs74027616
Chromosome Location	chr15:87581384-87581385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:87579937..87582914-chr15:88062293..88064888,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55750101	0.91[AFR][1000 genomes]
rs55889073	0.91[AFR][1000 genomes]
rs59695938	1.00[AFR][1000 genomes]
rs61267860	0.91[AFR][1000 genomes]
rs7178977	0.84[AFR][1000 genomes]
rs7180986	1.00[AFR][1000 genomes]
rs72755696	0.91[AFR][1000 genomes]
rs72757450	0.91[AFR][1000 genomes]
rs72757451	0.91[AFR][1000 genomes]
rs72757455	0.91[AFR][1000 genomes]
rs72757456	0.91[AFR][1000 genomes]
rs72757457	0.91[AFR][1000 genomes]
rs72757459	0.91[AFR][1000 genomes]
rs72757461	0.91[AFR][1000 genomes]
rs72757462	0.91[AFR][1000 genomes]
rs72757465	0.91[AFR][1000 genomes]
rs72757466	0.91[AFR][1000 genomes]
rs72757467	0.91[AFR][1000 genomes]
rs72757468	0.91[AFR][1000 genomes]
rs72757470	0.91[AFR][1000 genomes]
rs72757471	0.91[AFR][1000 genomes]
rs72757473	0.91[AFR][1000 genomes]
rs72757475	0.91[AFR][1000 genomes]
rs74025715	0.91[AFR][1000 genomes]
rs74025719	0.91[AFR][1000 genomes]
rs74025724	0.91[AFR][1000 genomes]
rs74025755	1.00[AFR][1000 genomes]
rs74025756	1.00[AFR][1000 genomes]
rs8025594	1.00[AFR][1000 genomes]
rs8039817	0.85[AFR][1000 genomes]
rs8042346	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039254	chr15:87070357-87942988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv533986	chr15:87100872-87633926	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1039005	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv542465	chr15:87228489-87813438	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044157	chr15:87458558-88101699	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1048366	chr15:87557904-87586707	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87577800-87581400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:87579600-87581600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:87579800-87581600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:87579800-87582600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:87579800-87583800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:87581200-87581800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:87581200-87581800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:87581200-87582400	Enhancers	HUES6 Cell Line	embryonic stem cell

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