Variant report

Variant	rs74028294
Chromosome Location	chr16:82816937-82816938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs74028291	1.00[AFR][1000 genomes]
rs74028292	1.00[AFR][1000 genomes]
rs74028295	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2751616	chr16:82714696-82852296	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1067216	chr16:82719694-82821762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv543000	chr16:82719694-82821762	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1066132	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv543001	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1063412	chr16:82806653-82826507	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82805600-82821600	Weak transcription	NHEK	skin
2	chr16:82807200-82817800	Weak transcription	HMEC	breast
3	chr16:82808000-82824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:82810600-82834800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr16:82810800-82821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82811200-82817000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:82812000-82821600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:82812800-82817200	Enhancers	Psoas Muscle	Psoas
9	chr16:82813000-82817400	Enhancers	Right Ventricle	heart
10	chr16:82813800-82819600	Enhancers	Fetal Muscle Leg	muscle
11	chr16:82814400-82819800	Enhancers	Primary B cells from peripheral blood	blood
12	chr16:82814600-82817000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr16:82814800-82817000	Enhancers	Aorta	Aorta
14	chr16:82815000-82817200	Enhancers	Colon Smooth Muscle	Colon
15	chr16:82815200-82817400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr16:82815400-82817400	Enhancers	Fetal Intestine Small	intestine
17	chr16:82815600-82817000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr16:82815600-82817200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr16:82815600-82817200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr16:82815600-82817200	Enhancers	Left Ventricle	heart
21	chr16:82815600-82817200	Enhancers	Right Atrium	heart
22	chr16:82815600-82817200	Enhancers	HSMM	muscle
23	chr16:82815800-82817000	Enhancers	Lung	lung
24	chr16:82815800-82817200	Enhancers	Fetal Muscle Trunk	muscle
25	chr16:82815800-82821800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr16:82815800-82834600	Weak transcription	HUVEC	blood vessel
27	chr16:82816000-82817000	Enhancers	HSMMtube	muscle
28	chr16:82816000-82817800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:82816000-82818000	Weak transcription	Colonic Mucosa	Colon
30	chr16:82816200-82817000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr16:82816200-82817200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr16:82816200-82817200	Enhancers	Fetal Stomach	stomach
33	chr16:82816200-82817200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr16:82816200-82817400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:82816400-82817000	Enhancers	Brain Germinal Matrix	brain
36	chr16:82816400-82817000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr16:82816400-82817000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr16:82816400-82817000	Enhancers	Fetal Brain Male	brain
39	chr16:82816400-82817000	Enhancers	Fetal Heart	heart
40	chr16:82816400-82817000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr16:82816400-82817200	Enhancers	Fetal Intestine Large	intestine
42	chr16:82816400-82817200	Enhancers	Gastric	stomach
43	chr16:82816400-82817200	Enhancers	Pancreas	Pancrea
44	chr16:82816400-82818000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr16:82816400-82818000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr16:82816600-82817000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:82816600-82817000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr16:82816600-82817000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr16:82816600-82817000	Enhancers	Brain Hippocampus Middle	brain
50	chr16:82816600-82817000	Flanking Active TSS	Duodenum Mucosa	Duodenum

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