Variant report

Variant	rs74042132
Chromosome Location	chr14:31565720-31565721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55718189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56297437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57869643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59058028	1.00[AMR][1000 genomes]
rs74042126	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042171	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042182	1.00[AMR][1000 genomes]
rs8004484	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1049063	chr14:31473521-31622741	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832763	chr14:31501597-31680021	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1043033	chr14:31538984-31686696	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31497000-31568600	Weak transcription	Fetal Kidney	kidney
2	chr14:31528600-31567200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:31529800-31566200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:31530000-31567000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:31530000-31567200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:31534200-31566400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:31534400-31566200	Weak transcription	Fetal Thymus	thymus
8	chr14:31534600-31572000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:31534800-31569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:31536400-31566000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:31537400-31569200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:31537800-31569800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:31538000-31567200	Weak transcription	GM12878-XiMat	blood
14	chr14:31539000-31567200	Weak transcription	Thymus	Thymus
15	chr14:31540600-31567000	Weak transcription	Dnd41	blood
16	chr14:31541800-31567200	Weak transcription	Fetal Brain Male	brain
17	chr14:31544600-31566200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:31544600-31566200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr14:31544800-31566600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:31546800-31567400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:31547000-31569800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:31548600-31569600	Weak transcription	Brain Germinal Matrix	brain
23	chr14:31548800-31571800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:31550000-31567000	Weak transcription	Esophagus	oesophagus
25	chr14:31550200-31566000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:31550400-31569800	Weak transcription	Aorta	Aorta
27	chr14:31550600-31566600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:31550600-31568600	Weak transcription	K562	blood
29	chr14:31553600-31567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:31554200-31566400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr14:31554600-31566000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:31554600-31566200	Weak transcription	Lung	lung
33	chr14:31554600-31567200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:31554800-31566400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr14:31555000-31566600	Weak transcription	Fetal Brain Female	brain
36	chr14:31555200-31566200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:31555200-31566600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:31555400-31566600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr14:31556600-31566000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr14:31556800-31567000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:31557400-31565800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:31558600-31569400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:31559800-31568200	Weak transcription	Colonic Mucosa	Colon
44	chr14:31560000-31566600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:31560000-31567000	Weak transcription	Gastric	stomach
46	chr14:31560200-31566200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:31560200-31567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr14:31560400-31565800	Weak transcription	HUVEC	blood vessel
49	chr14:31560400-31566200	Weak transcription	Primary T cells from cord blood	blood
50	chr14:31560400-31567200	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links