Variant report

Variant	rs74042182
Chromosome Location	chr14:31664130-31664131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31661874..31669449-chr14:31675207..31678992,11	MCF-7	breast:
2	chr14:31662501..31665350-chr14:31676259..31678758,2	MCF-7	breast:
3	chr14:31659369..31661634-chr14:31664053..31665953,2	MCF-7	breast:
4	chr14:31657985..31659593-chr14:31664052..31666042,2	MCF-7	breast:
5	chr14:31662672..31665414-chr14:31666096..31668689,4	K562	blood:
6	chr14:31662799..31666090-chr14:31674477..31678636,5	K562	blood:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55718189	1.00[AMR][1000 genomes]
rs56297437	1.00[AMR][1000 genomes]
rs57869643	1.00[AMR][1000 genomes]
rs59058028	1.00[AMR][1000 genomes]
rs61754154	1.00[AMR][1000 genomes]
rs61754155	1.00[AMR][1000 genomes]
rs7151851	1.00[AMR][1000 genomes]
rs7153493	1.00[AMR][1000 genomes]
rs74042126	1.00[AMR][1000 genomes]
rs74042132	1.00[AMR][1000 genomes]
rs74042160	1.00[AMR][1000 genomes]
rs74042161	1.00[AMR][1000 genomes]
rs74042162	1.00[AMR][1000 genomes]
rs74042164	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042171	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8004393	1.00[AMR][1000 genomes]
rs8004484	1.00[AMR][1000 genomes]
rs8011770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv832763	chr14:31501597-31680021	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1043033	chr14:31538984-31686696	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31629800-31664800	Weak transcription	Right Atrium	heart
2	chr14:31637200-31675000	Weak transcription	Gastric	stomach
3	chr14:31638800-31672000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:31640800-31674000	Weak transcription	Fetal Brain Male	brain
5	chr14:31643000-31664800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:31643000-31664800	Weak transcription	Psoas Muscle	Psoas
7	chr14:31643200-31675000	Weak transcription	Esophagus	oesophagus
8	chr14:31643400-31675000	Weak transcription	Spleen	Spleen
9	chr14:31644800-31664200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:31644800-31664400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:31644800-31675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:31644800-31675000	Weak transcription	Pancreas	Pancrea
13	chr14:31645600-31675000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:31646600-31674400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:31647400-31664200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:31647400-31664400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:31647400-31667200	Weak transcription	Brain Substantia Nigra	brain
18	chr14:31647600-31665200	Weak transcription	K562	blood
19	chr14:31648000-31674800	Weak transcription	Thymus	Thymus
20	chr14:31648200-31664400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:31648200-31666800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:31648200-31670200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:31648200-31671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr14:31649000-31664200	Weak transcription	HMEC	breast
25	chr14:31651000-31664400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:31651000-31674800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:31654400-31664400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:31654400-31674800	Weak transcription	Colonic Mucosa	Colon
29	chr14:31654600-31671800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:31655000-31674400	Weak transcription	Fetal Brain Female	brain
31	chr14:31655200-31666600	Weak transcription	Brain Angular Gyrus	brain
32	chr14:31656800-31669400	Weak transcription	Lung	lung
33	chr14:31658600-31664200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:31658600-31664600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr14:31658800-31664200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:31659000-31664400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:31659000-31666000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr14:31659000-31671800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:31659200-31664800	Weak transcription	Left Ventricle	heart
40	chr14:31659200-31665800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr14:31659400-31664400	Weak transcription	Ovary	ovary
42	chr14:31659400-31664800	Weak transcription	Aorta	Aorta
43	chr14:31659400-31666200	Weak transcription	Right Ventricle	heart
44	chr14:31659600-31666000	Weak transcription	Stomach Mucosa	stomach
45	chr14:31659800-31664400	Weak transcription	Primary T cells from cord blood	blood
46	chr14:31659800-31666000	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:31659800-31673800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:31660000-31664200	Strong transcription	HepG2	liver
49	chr14:31660200-31666800	Weak transcription	Hela-S3	cervix
50	chr14:31660200-31669200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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