Variant report

Variant	rs7404563
Chromosome Location	chr16:72915166-72915167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:72914732..72917290-chr16:72920301..72922617,2	MCF-7	breast:
2	chr16:72910303..72916388-chr16:73088434..73093431,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6499593	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr16:72895200-72918000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:72907800-72916400	Weak transcription	Fetal Brain Female	brain
4	chr16:72909400-72915600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr16:72909400-72918200	Weak transcription	Brain Substantia Nigra	brain
6	chr16:72909600-72918400	Weak transcription	Brain Anterior Caudate	brain
7	chr16:72910000-72916200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:72910200-72916400	Weak transcription	Brain Hippocampus Middle	brain
9	chr16:72910400-72920400	Weak transcription	Fetal Kidney	kidney
10	chr16:72910400-72925200	Weak transcription	Primary B cells from cord blood	blood
11	chr16:72910600-72915400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:72910800-72916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:72910800-72923600	Weak transcription	GM12878-XiMat	blood
14	chr16:72911200-72918200	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:72911200-72918200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr16:72911600-72918400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr16:72911800-72916200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:72911800-72918600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr16:72912000-72918200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr16:72912000-72919000	Weak transcription	Gastric	stomach
21	chr16:72912400-72918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr16:72912400-72920200	Weak transcription	Colonic Mucosa	Colon
23	chr16:72912400-72927400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr16:72912400-72928200	Weak transcription	Small Intestine	intestine
25	chr16:72912600-72916400	Weak transcription	Aorta	Aorta
26	chr16:72912600-72926000	Weak transcription	NHEK	skin
27	chr16:72912800-72917600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr16:72912800-72917800	Weak transcription	Adipose Nuclei	Adipose
29	chr16:72912800-72919000	Weak transcription	Pancreas	Pancrea
30	chr16:72912800-72919000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:72912800-72919000	Weak transcription	A549	lung
32	chr16:72912800-72921000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr16:72912800-72921600	Weak transcription	Dnd41	blood
34	chr16:72913000-72916000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr16:72913000-72916200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr16:72913000-72916400	Weak transcription	Right Atrium	heart
37	chr16:72913000-72917200	Weak transcription	Osteobl	bone
38	chr16:72913000-72917400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr16:72913000-72917400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr16:72913000-72917600	Weak transcription	Fetal Lung	lung
41	chr16:72913000-72917800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr16:72913000-72917800	Weak transcription	HSMM	muscle
43	chr16:72913000-72917800	Weak transcription	NH-A	brain
44	chr16:72913000-72918000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr16:72913000-72918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr16:72913000-72918200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr16:72913000-72918600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr16:72913000-72918600	Weak transcription	Fetal Muscle Leg	muscle
49	chr16:72913000-72918800	Weak transcription	Liver	Liver
50	chr16:72913000-72918800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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