Variant report

Variant	rs74053169
Chromosome Location	chr11:8782728-8782729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16905815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56210429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56388022	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57145477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58419940	1.00[AMR][1000 genomes]
rs59279926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59314560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59524952	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59974779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60980006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6484494	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053166	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054204	0.87[AFR][1000 genomes]
rs74054210	1.00[AMR][1000 genomes]
rs74054216	1.00[AMR][1000 genomes]
rs74054218	1.00[AMR][1000 genomes]
rs7944416	1.00[AMR][1000 genomes]
rs7944777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8772400-8782800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
5	chr11:8775400-8782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:8777400-8783400	Enhancers	NHLF	lung
7	chr11:8777400-8784000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:8777400-8784200	Enhancers	Fetal Intestine Large	intestine
9	chr11:8777400-8784200	Enhancers	Left Ventricle	heart
10	chr11:8777400-8795800	Enhancers	Rectal Smooth Muscle	rectum
11	chr11:8777600-8787800	Weak transcription	Esophagus	oesophagus
12	chr11:8777800-8785400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:8778000-8784000	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:8779000-8783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:8779000-8784400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:8779200-8784200	Genic enhancers	Fetal Stomach	stomach
17	chr11:8779200-8785000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:8779200-8785000	Weak transcription	HSMMtube	muscle
19	chr11:8779200-8786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:8779400-8786600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:8779400-8787000	Weak transcription	NHEK	skin
22	chr11:8779600-8784000	Enhancers	Right Ventricle	heart
23	chr11:8779600-8786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:8779600-8799600	Weak transcription	Fetal Brain Male	brain
25	chr11:8779800-8784000	Enhancers	Spleen	Spleen
26	chr11:8779800-8784800	Weak transcription	HSMM	muscle
27	chr11:8780000-8786600	Weak transcription	HMEC	breast
28	chr11:8780000-8792400	Weak transcription	HepG2	liver
29	chr11:8780200-8783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:8780200-8784000	Enhancers	Right Atrium	heart
31	chr11:8780400-8783000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:8780400-8784000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:8780400-8784400	Enhancers	Ovary	ovary
34	chr11:8780600-8783400	Enhancers	Brain Anterior Caudate	brain
35	chr11:8780600-8784000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:8780800-8784000	Enhancers	Pancreas	Pancrea
37	chr11:8781000-8783000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:8781000-8783200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:8781000-8783400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr11:8781000-8783800	Enhancers	Fetal Kidney	kidney
41	chr11:8781000-8783800	Enhancers	Placenta	Placenta
42	chr11:8781000-8786800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:8781200-8783600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:8781200-8784000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:8781200-8784000	Enhancers	Stomach Mucosa	stomach
46	chr11:8781400-8783400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:8781400-8786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:8781400-8787800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:8781400-8794600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:8781600-8782800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links