Variant report

Variant	rs74054210
Chromosome Location	chr11:8831930-8831931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8707539..8711325-chr11:8831652..8835543,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM66-7	chr11:8829373-8832882	NONHSAT017885

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16905815	1.00[AMR][1000 genomes]
rs56210429	1.00[AMR][1000 genomes]
rs56388022	1.00[AMR][1000 genomes]
rs57145477	1.00[AMR][1000 genomes]
rs58419940	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59279926	1.00[AMR][1000 genomes]
rs59314560	1.00[AMR][1000 genomes]
rs59524952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59974779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60980006	1.00[AMR][1000 genomes]
rs6484494	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053135	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053138	1.00[AMR][1000 genomes]
rs74053141	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053166	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74053169	1.00[AMR][1000 genomes]
rs74053170	1.00[AMR][1000 genomes]
rs74053172	1.00[AMR][1000 genomes]
rs74053175	1.00[AMR][1000 genomes]
rs74053180	1.00[AMR][1000 genomes]
rs74053189	1.00[AMR][1000 genomes]
rs74054216	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74054218	1.00[AMR][1000 genomes]
rs7944416	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7944777	1.00[AMR][1000 genomes]
rs7945378	1.00[AMR][1000 genomes]
rs7949286	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527073	chr11:8829168-8848463	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8828800-8833200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:8829000-8832200	Flanking Active TSS	Osteobl	bone
3	chr11:8829000-8832800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr11:8829400-8832000	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr11:8829400-8832800	Genic enhancers	Placenta	Placenta
6	chr11:8829400-8833000	Flanking Active TSS	NH-A	brain
7	chr11:8830000-8832600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr11:8830000-8832600	Active TSS	Right Atrium	heart
9	chr11:8830200-8832800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:8830200-8833000	Active TSS	Colon Smooth Muscle	Colon
11	chr11:8830400-8832600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:8830400-8832600	Active TSS	Gastric	stomach
13	chr11:8830400-8833000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr11:8830600-8832000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:8830600-8832000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:8830600-8832200	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr11:8830600-8832600	Active TSS	Right Ventricle	heart
18	chr11:8830600-8832800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:8830600-8832800	Active TSS	Aorta	Aorta
20	chr11:8830800-8832000	Active TSS	Esophagus	oesophagus
21	chr11:8830800-8832200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:8830800-8832200	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr11:8830800-8832200	Active TSS	Pancreas	Pancrea
24	chr11:8830800-8832200	Active TSS	HMEC	breast
25	chr11:8830800-8832400	Active TSS	Left Ventricle	heart
26	chr11:8830800-8832400	Active TSS	Stomach Mucosa	stomach
27	chr11:8830800-8832600	Active TSS	Colonic Mucosa	Colon
28	chr11:8830800-8832600	Active TSS	Fetal Intestine Large	intestine
29	chr11:8830800-8832800	Active TSS	Duodenum Mucosa	Duodenum
30	chr11:8830800-8833000	Flanking Active TSS	Fetal Lung	lung
31	chr11:8830800-8833000	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr11:8830800-8833000	Active TSS	Ovary	ovary
33	chr11:8831000-8832000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr11:8831000-8832200	Active TSS	Stomach Smooth Muscle	stomach
35	chr11:8831000-8832400	Active TSS	Muscle Satellite Cultured Cells	--
36	chr11:8831000-8832400	Active TSS	Fetal Stomach	stomach
37	chr11:8831000-8832400	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr11:8831000-8832400	Active TSS	Rectal Smooth Muscle	rectum
39	chr11:8831000-8832600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:8831000-8832600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:8831000-8832800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr11:8831000-8833000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr11:8831200-8832200	Active TSS	Fetal Heart	heart
44	chr11:8831200-8832200	Active TSS	NHEK	skin
45	chr11:8831200-8832400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:8831200-8832400	Active TSS	Fetal Kidney	kidney
47	chr11:8831200-8832600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:8831200-8832600	Active TSS	Brain Anterior Caudate	brain
49	chr11:8831200-8832600	Active TSS	Brain Cingulate Gyrus	brain
50	chr11:8831200-8832600	Active TSS	Psoas Muscle	Psoas

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