Variant report

Variant	rs74056763
Chromosome Location	chr14:65888376-65888377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12434513	0.86[AFR][1000 genomes]
rs17102708	0.86[AFR][1000 genomes]
rs55698845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55723633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55954698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55967642	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56350757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57283810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59328088	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60393585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60470427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056779	1.00[EUR][1000 genomes]
rs74056784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056795	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056796	1.00[AMR][1000 genomes]
rs74056798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056800	0.86[AFR][1000 genomes]
rs74058503	1.00[AMR][1000 genomes]
rs74058507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058529	1.00[AMR][1000 genomes]
rs74058539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
3	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65880800-65898000	Weak transcription	Gastric	stomach
5	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:65881600-65888400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:65881600-65889600	Weak transcription	Fetal Brain Male	brain
10	chr14:65881800-65888600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:65881800-65895000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
14	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
15	chr14:65882200-65890600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:65882400-65888600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:65882400-65890400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:65882800-65890400	Weak transcription	Brain Germinal Matrix	brain
20	chr14:65883800-65890600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:65884200-65890600	Weak transcription	Stomach Mucosa	stomach
22	chr14:65886200-65895600	Weak transcription	Primary T cells from cord blood	blood
23	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:65886800-65890600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:65886800-65890800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:65886800-65898000	Weak transcription	Dnd41	blood
27	chr14:65887000-65892600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:65887400-65898400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:65888000-65888400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:65888000-65888400	Enhancers	H9 Cell Line	embryonic stem cell
31	chr14:65888000-65888400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr14:65888000-65888400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:65888000-65888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:65888000-65888400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr14:65888000-65888400	Enhancers	Ovary	ovary
36	chr14:65888000-65888400	Enhancers	HMEC	breast
37	chr14:65888000-65888600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr14:65888000-65888800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr14:65888000-65888800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:65888000-65888800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:65888000-65888800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr14:65888000-65888800	Enhancers	HUVEC	blood vessel
43	chr14:65888000-65888800	Enhancers	K562	blood
44	chr14:65888000-65888800	Enhancers	NHEK	skin
45	chr14:65888000-65889000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr14:65888000-65889000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:65888000-65889000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:65888000-65889200	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr14:65888000-65889200	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr14:65888000-65889200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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