Variant report

Variant	rs59328088
Chromosome Location	chr14:65902143-65902144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12433688	0.83[AFR][1000 genomes]
rs17102688	0.83[AFR][1000 genomes]
rs55698845	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55723633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55954698	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55967642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258162	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56350757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56821971	0.83[AFR][1000 genomes]
rs57283810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58087042	0.83[AFR][1000 genomes]
rs58160832	0.83[AFR][1000 genomes]
rs60393585	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60470427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61016861	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61417186	0.83[AFR][1000 genomes]
rs74056763	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056766	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056768	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056775	0.83[AFR][1000 genomes]
rs74056779	1.00[EUR][1000 genomes]
rs74056782	0.83[AFR][1000 genomes]
rs74056784	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056787	0.83[AFR][1000 genomes]
rs74056794	0.83[AFR][1000 genomes]
rs74056795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056796	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056798	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058503	1.00[AMR][1000 genomes]
rs74058507	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058518	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058524	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058525	0.83[AFR][1000 genomes]
rs74058528	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058529	1.00[AMR][1000 genomes]
rs74058539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058541	0.83[AFR][1000 genomes]
rs74058545	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74058546	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:65888400-65905400	Weak transcription	Ovary	ovary
5	chr14:65891600-65904000	Weak transcription	Lung	lung
6	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:65893600-65902200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
11	chr14:65898400-65935600	Weak transcription	Gastric	stomach
12	chr14:65899000-65902200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:65899000-65903600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:65899600-65905200	Weak transcription	Psoas Muscle	Psoas
16	chr14:65899600-65909600	Weak transcription	Left Ventricle	heart
17	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:65899800-65903600	Weak transcription	Stomach Mucosa	stomach
19	chr14:65899800-65905000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:65899800-65905200	Weak transcription	Small Intestine	intestine
21	chr14:65899800-65906000	Weak transcription	Placenta	Placenta
22	chr14:65899800-65917600	Weak transcription	Thymus	Thymus
23	chr14:65900000-65903600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:65900000-65917400	Weak transcription	Fetal Thymus	thymus
25	chr14:65900200-65902200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:65900200-65903600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:65900200-65912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:65900400-65902200	Weak transcription	Brain Germinal Matrix	brain
29	chr14:65900400-65904000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr14:65900400-65912800	Weak transcription	Brain Anterior Caudate	brain
31	chr14:65900600-65903400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:65900600-65903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr14:65900800-65904000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:65901000-65902200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:65901000-65902200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:65901000-65902600	Weak transcription	Fetal Stomach	stomach
37	chr14:65901000-65904400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:65901200-65902400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:65901200-65903400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:65901200-65904000	Genic enhancers	Dnd41	blood
41	chr14:65901200-65904200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr14:65901200-65905400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:65901200-65907400	Weak transcription	HSMM	muscle
44	chr14:65901200-65917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:65901200-65920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:65901400-65902200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:65901400-65903600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr14:65901400-65905800	Weak transcription	Brain Substantia Nigra	brain
49	chr14:65901400-65910800	Weak transcription	Osteobl	bone
50	chr14:65901600-65902200	Weak transcription	Primary hematopoietic stem cells	blood

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