Variant report

Variant	rs56821971
Chromosome Location	chr14:65995797-65995798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAX-13	chr14:65995548-65995917	NONHSAT037394

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10130526	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10131727	0.98[ASN][1000 genomes]
rs10143920	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10149311	0.98[ASN][1000 genomes]
rs10483777	1.00[ASN][1000 genomes]
rs12323434	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12431562	1.00[ASN][1000 genomes]
rs12431772	0.81[ASN][1000 genomes]
rs12432032	1.00[ASN][1000 genomes]
rs12432426	1.00[ASN][1000 genomes]
rs12433051	0.95[ASN][1000 genomes]
rs12433273	1.00[ASN][1000 genomes]
rs12433688	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434375	0.95[ASN][1000 genomes]
rs12434513	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434626	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12435769	0.81[ASN][1000 genomes]
rs12435809	0.91[ASN][1000 genomes]
rs12436349	1.00[ASN][1000 genomes]
rs12436381	0.98[ASN][1000 genomes]
rs12436402	0.95[ASN][1000 genomes]
rs12436434	1.00[ASN][1000 genomes]
rs12436482	1.00[ASN][1000 genomes]
rs12436677	0.91[ASN][1000 genomes]
rs12436771	0.81[ASN][1000 genomes]
rs12437088	1.00[ASN][1000 genomes]
rs12437132	0.95[ASN][1000 genomes]
rs17102688	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17102708	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102839	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs17102854	0.81[ASN][1000 genomes]
rs17246385	0.91[ASN][1000 genomes]
rs17246441	0.81[ASN][1000 genomes]
rs17826892	0.81[ASN][1000 genomes]
rs1952605	0.95[ASN][1000 genomes]
rs2073295	0.81[ASN][1000 genomes]
rs2300863	0.87[ASN][1000 genomes]
rs2300866	0.87[ASN][1000 genomes]
rs2300870	0.81[ASN][1000 genomes]
rs28496380	0.81[ASN][1000 genomes]
rs55674739	0.94[AFR][1000 genomes]
rs55698845	0.94[AFR][1000 genomes]
rs55723633	0.84[AFR][1000 genomes]
rs55954698	0.94[AFR][1000 genomes]
rs56258162	0.94[AFR][1000 genomes]
rs56401246	0.83[AFR][1000 genomes]
rs57228058	0.94[AFR][1000 genomes]
rs57283810	0.84[AFR][1000 genomes]
rs58087042	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58160832	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59328088	0.83[AFR][1000 genomes]
rs60393585	0.94[AFR][1000 genomes]
rs60470427	0.94[AFR][1000 genomes]
rs61016861	0.94[AFR][1000 genomes]
rs61417186	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74056768	0.94[AFR][1000 genomes]
rs74056775	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74056782	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056784	0.94[AFR][1000 genomes]
rs74056787	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056794	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056796	0.94[AFR][1000 genomes]
rs74056798	0.94[AFR][1000 genomes]
rs74056800	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056807	0.89[AFR][1000 genomes]
rs74056811	0.94[AFR][1000 genomes]
rs74056813	0.94[AFR][1000 genomes]
rs74056815	0.94[AFR][1000 genomes]
rs74056816	0.94[AFR][1000 genomes]
rs74058503	0.84[AFR][1000 genomes]
rs74058505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74058507	0.94[AFR][1000 genomes]
rs74058513	0.84[AFR][1000 genomes]
rs74058518	0.94[AFR][1000 genomes]
rs74058519	0.84[AFR][1000 genomes]
rs74058523	0.94[AFR][1000 genomes]
rs74058524	0.94[AFR][1000 genomes]
rs74058525	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74058528	0.94[AFR][1000 genomes]
rs74058529	0.84[AFR][1000 genomes]
rs74058536	0.83[AFR][1000 genomes]
rs74058539	0.94[AFR][1000 genomes]
rs74058541	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs74058545	0.94[AFR][1000 genomes]
rs74058546	0.94[AFR][1000 genomes]
rs74058547	0.94[AFR][1000 genomes]
rs74058548	0.94[AFR][1000 genomes]
rs74058549	0.94[AFR][1000 genomes]
rs74058550	0.94[AFR][1000 genomes]
rs74058551	0.94[AFR][1000 genomes]
rs74058553	0.94[AFR][1000 genomes]
rs74058554	0.94[AFR][1000 genomes]
rs74058556	0.94[AFR][1000 genomes]
rs74058557	0.94[AFR][1000 genomes]
rs74058560	0.81[ASN][1000 genomes]
rs74058562	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs74058563	0.94[AFR][1000 genomes]
rs74058564	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65981400-65996800	Weak transcription	Small Intestine	intestine
2	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:65994600-65996400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:65994600-65996400	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr14:65994600-65996600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr14:65994800-65996600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:65995000-65995800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr14:65995200-66028000	Weak transcription	Dnd41	blood
10	chr14:65995400-65996200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:65995400-65997200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:65995400-65997600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr14:65995400-65998400	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:65995400-65998400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:65995400-65998800	Weak transcription	Ovary	ovary
16	chr14:65995400-66004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65995400-66004600	Weak transcription	Pancreas	Pancrea
18	chr14:65995400-66004600	Weak transcription	Thymus	Thymus
19	chr14:65995400-66006600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:65995400-66061000	Weak transcription	Gastric	stomach
21	chr14:65995600-65997200	ZNF genes & repeats	GM12878-XiMat	blood

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