Variant report

Variant	rs10130526
Chromosome Location	chr14:66035754-66035755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66033929..66036074-chr14:66039041..66041342,2	MCF-7	breast:
2	chr14:66034507..66036127-chr14:66047360..66049371,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10131727	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10143920	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149311	0.93[ASN][1000 genomes]
rs10483777	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs11847101	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11849249	0.83[ASN][1000 genomes]
rs11849792	0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12323434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12431562	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs12431772	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12432032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12432422	0.83[ASN][1000 genomes]
rs12432426	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs12433051	0.91[ASN][1000 genomes]
rs12433273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12433688	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434375	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12434513	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435769	0.85[ASN][1000 genomes]
rs12435809	0.95[ASN][1000 genomes]
rs12435971	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12436349	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12436381	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12436402	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12436434	0.95[ASN][1000 genomes]
rs12436482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12436677	0.95[ASN][1000 genomes]
rs12436771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12437088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12437132	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17102688	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17102708	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17102839	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17102854	0.85[ASN][1000 genomes]
rs17102894	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17102898	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17102910	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17246385	0.95[ASN][1000 genomes]
rs17246441	0.85[ASN][1000 genomes]
rs17246504	0.80[ASN][1000 genomes]
rs17246532	0.82[ASN][1000 genomes]
rs17826892	0.85[ASN][1000 genomes]
rs17826946	0.85[ASN][1000 genomes]
rs17826952	0.85[ASN][1000 genomes]
rs1952605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2073295	0.85[ASN][1000 genomes]
rs2268965	0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2295360	0.80[ASN][1000 genomes]
rs2300863	0.91[ASN][1000 genomes]
rs2300866	0.91[ASN][1000 genomes]
rs2300870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28496380	0.85[ASN][1000 genomes]
rs2898701	0.83[ASN][1000 genomes]
rs56821971	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58087042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58160832	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59036531	0.83[ASN][1000 genomes]
rs61417186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987778	0.83[ASN][1000 genomes]
rs74056775	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74056782	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74056787	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74056794	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74056800	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74058505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74058525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74058541	1.00[ASN][1000 genomes]
rs74058560	0.85[ASN][1000 genomes]
rs74058562	0.85[ASN][1000 genomes]
rs8004564	0.83[ASN][1000 genomes]
rs956582	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs997794	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv974468	chr14:66027622-66038354	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:66016000-66041400	Weak transcription	Ovary	ovary
4	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
5	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
10	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:66023200-66040200	Weak transcription	Lung	lung
12	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain
15	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
16	chr14:66026200-66040600	Weak transcription	Brain Angular Gyrus	brain
17	chr14:66026400-66036600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:66026800-66042200	Weak transcription	Placenta	Placenta
19	chr14:66026800-66048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:66027600-66036600	Weak transcription	Brain Anterior Caudate	brain
21	chr14:66027600-66037200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:66027600-66044200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:66027800-66041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:66028000-66039600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:66028600-66042400	Weak transcription	NH-A	brain
26	chr14:66028800-66039200	Weak transcription	Fetal Thymus	thymus
27	chr14:66028800-66040800	Weak transcription	Left Ventricle	heart
28	chr14:66028800-66042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:66028800-66044200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:66029000-66039800	Weak transcription	Fetal Intestine Large	intestine
31	chr14:66029800-66039600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:66030200-66040200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr14:66030200-66040800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:66032000-66037000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:66032000-66037200	Weak transcription	Primary T cells from cord blood	blood
36	chr14:66032000-66038000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:66032000-66041600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:66032000-66042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:66032200-66039200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:66033000-66035800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:66033200-66036600	Weak transcription	Dnd41	blood
44	chr14:66033200-66053600	Weak transcription	Small Intestine	intestine
45	chr14:66033400-66036800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:66033400-66038200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:66034000-66036000	Enhancers	NHEK	skin
48	chr14:66034200-66036800	Weak transcription	Primary B cells from cord blood	blood
49	chr14:66034200-66036800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr14:66034200-66041000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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