Variant report

Variant	rs12432426
Chromosome Location	chr14:65988946-65988947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65983591..65986452-chr14:65987823..65989554,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10130526	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs10131727	0.88[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs10143920	1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs10149311	0.98[ASN][1000 genomes]
rs10483777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849792	0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs12323434	0.98[ASN][1000 genomes]
rs12431562	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431772	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12432032	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12433273	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433688	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12434375	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434513	1.00[ASN][1000 genomes]
rs12434626	0.95[ASN][1000 genomes]
rs12435769	0.81[ASN][1000 genomes]
rs12435809	0.91[ASN][1000 genomes]
rs12436349	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436381	0.88[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs12436402	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436434	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436482	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436677	0.91[ASN][1000 genomes]
rs12436871	0.85[JPT][hapmap]
rs12437088	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17102688	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs17102708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17102839	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17102854	0.81[ASN][1000 genomes]
rs17246385	0.91[ASN][1000 genomes]
rs17246441	0.81[ASN][1000 genomes]
rs17826892	0.81[ASN][1000 genomes]
rs1952605	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300863	0.87[ASN][1000 genomes]
rs2300866	0.87[ASN][1000 genomes]
rs2300870	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs28496380	0.81[ASN][1000 genomes]
rs56821971	1.00[ASN][1000 genomes]
rs58087042	0.95[ASN][1000 genomes]
rs58160832	0.95[ASN][1000 genomes]
rs61417186	0.95[ASN][1000 genomes]
rs7141590	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs74056775	0.95[ASN][1000 genomes]
rs74056782	1.00[ASN][1000 genomes]
rs74056787	1.00[ASN][1000 genomes]
rs74056794	1.00[ASN][1000 genomes]
rs74056800	1.00[ASN][1000 genomes]
rs74058505	1.00[ASN][1000 genomes]
rs74058525	0.95[ASN][1000 genomes]
rs74058541	0.95[ASN][1000 genomes]
rs74058560	0.81[ASN][1000 genomes]
rs74058562	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65969800-65994600	Weak transcription	Left Ventricle	heart
3	chr14:65981200-65994600	Weak transcription	Gastric	stomach
4	chr14:65981400-65996800	Weak transcription	Small Intestine	intestine
5	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:65985400-65994200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:65985800-65990800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:65985800-65994800	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:65988600-65991200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr14:65988800-65989000	ZNF genes & repeats	Primary T cells from cord blood	blood

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