Variant report

Variant	rs12437132
Chromosome Location	chr14:65895084-65895085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65894339..65896044-chr14:65904651..65907557,2	MCF-7	breast:
2	chr14:65878501..65880315-chr14:65894328..65896691,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10130526	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs10131727	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs10143920	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs10149311	0.93[ASN][1000 genomes]
rs10483777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12323434	0.93[ASN][1000 genomes]
rs12431562	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12432032	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12432426	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12433051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433273	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12433688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12434375	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12434513	0.95[ASN][1000 genomes]
rs12434626	0.91[ASN][1000 genomes]
rs12436349	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12436381	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs12436402	0.91[ASN][1000 genomes]
rs12436434	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12436482	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12436871	0.85[JPT][hapmap]
rs12437088	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12437394	1.00[EUR][1000 genomes]
rs12590628	1.00[AFR][1000 genomes]
rs17102688	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17102708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1952605	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2297962	1.00[EUR][1000 genomes]
rs56821971	0.95[ASN][1000 genomes]
rs57309452	1.00[EUR][1000 genomes]
rs57571874	1.00[EUR][1000 genomes]
rs58087042	0.91[ASN][1000 genomes]
rs58160832	1.00[ASN][1000 genomes]
rs58794139	1.00[EUR][1000 genomes]
rs59170311	1.00[EUR][1000 genomes]
rs60824754	1.00[EUR][1000 genomes]
rs61417186	0.91[ASN][1000 genomes]
rs7141590	0.86[JPT][hapmap]
rs73282204	1.00[EUR][1000 genomes]
rs73282206	1.00[EUR][1000 genomes]
rs73282208	1.00[EUR][1000 genomes]
rs74056775	1.00[ASN][1000 genomes]
rs74056782	0.95[ASN][1000 genomes]
rs74056787	0.95[ASN][1000 genomes]
rs74056794	0.95[ASN][1000 genomes]
rs74056800	0.95[ASN][1000 genomes]
rs74058505	0.95[ASN][1000 genomes]
rs74058525	0.91[ASN][1000 genomes]
rs74058541	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
3	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65880800-65898000	Weak transcription	Gastric	stomach
5	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
10	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
11	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:65886200-65895600	Weak transcription	Primary T cells from cord blood	blood
13	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:65886800-65898000	Weak transcription	Dnd41	blood
15	chr14:65887400-65898400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:65888200-65898800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:65888200-65898800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:65888400-65898800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:65888400-65905400	Weak transcription	Ovary	ovary
20	chr14:65888800-65898800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:65889000-65898800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:65889200-65898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:65889200-65899400	Weak transcription	Colon Smooth Muscle	Colon
25	chr14:65889200-65899400	Weak transcription	NHDF-Ad	bronchial
26	chr14:65891000-65898800	Weak transcription	Stomach Mucosa	stomach
27	chr14:65891000-65899200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:65891200-65900400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:65891600-65904000	Weak transcription	Lung	lung
30	chr14:65891800-65898800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:65892600-65895800	Enhancers	K562	blood
33	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:65893400-65898400	Weak transcription	Osteobl	bone
36	chr14:65893600-65902200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:65893800-65898400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr14:65894000-65895600	Enhancers	Brain Substantia Nigra	brain
39	chr14:65894400-65895400	Enhancers	Brain Cingulate Gyrus	brain
40	chr14:65894400-65898600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:65894600-65895200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr14:65894600-65895600	Enhancers	Brain Angular Gyrus	brain
43	chr14:65894600-65895800	Enhancers	Brain Hippocampus Middle	brain
44	chr14:65894800-65895400	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr14:65894800-65895800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:65894800-65895800	Enhancers	Brain Anterior Caudate	brain
47	chr14:65895000-65895600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr14:65895000-65895800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr14:65895000-65898600	Weak transcription	GM12878-XiMat	blood

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