Variant report

Variant	rs73282204
Chromosome Location	chr14:65847351-65847352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65846264..65850153-chr14:65876897..65880691,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12433051	1.00[EUR][1000 genomes]
rs12436871	0.80[ASN][1000 genomes]
rs12437132	1.00[EUR][1000 genomes]
rs12437394	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297962	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56921348	0.80[ASN][1000 genomes]
rs57134875	0.83[AFR][1000 genomes]
rs57309452	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57571874	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58794139	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59170311	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59515554	0.83[AFR][1000 genomes]
rs60824754	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7141590	0.80[ASN][1000 genomes]
rs73280130	0.83[AFR][1000 genomes]
rs73280134	0.83[AFR][1000 genomes]
rs73282206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282270	0.83[AFR][1000 genomes]
rs73282279	0.83[AFR][1000 genomes]
rs73282289	0.83[AFR][1000 genomes]
rs73282292	0.83[AFR][1000 genomes]
rs73282299	0.83[AFR][1000 genomes]
rs73282302	0.83[AFR][1000 genomes]
rs73284108	0.83[AFR][1000 genomes]
rs73284134	0.83[AFR][1000 genomes]
rs73284147	0.83[AFR][1000 genomes]
rs73284154	0.83[AFR][1000 genomes]
rs73284161	0.83[AFR][1000 genomes]
rs73284170	0.83[AFR][1000 genomes]
rs73284186	0.83[AFR][1000 genomes]
rs73286112	0.83[AFR][1000 genomes]
rs73286126	0.83[AFR][1000 genomes]
rs73286127	0.83[AFR][1000 genomes]
rs73286148	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65840400-65850800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65841400-65848600	Weak transcription	Brain Substantia Nigra	brain

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