Variant report

Variant	rs73286126
Chromosome Location	chr14:66039424-66039425
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66033929..66036074-chr14:66039041..66041342,2	MCF-7	breast:
2	chr14:65878171..65880345-chr14:66037804..66039822,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs57134875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58794139	0.83[AFR][1000 genomes]
rs58925725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61187056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268519	1.00[AFR][1000 genomes]
rs73268522	1.00[AFR][1000 genomes]
rs73268560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268567	1.00[AFR][1000 genomes]
rs73268575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268588	0.91[AFR][1000 genomes]
rs73268592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282204	0.83[AFR][1000 genomes]
rs73282270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282301	1.00[AMR][1000 genomes]
rs73282302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:66016000-66041400	Weak transcription	Ovary	ovary
4	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
5	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:66023200-66040200	Weak transcription	Lung	lung
10	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
13	chr14:66026200-66040600	Weak transcription	Brain Angular Gyrus	brain
14	chr14:66026800-66042200	Weak transcription	Placenta	Placenta
15	chr14:66026800-66048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:66027600-66044200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:66027800-66041800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:66028000-66039600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:66028600-66042400	Weak transcription	NH-A	brain
20	chr14:66028800-66040800	Weak transcription	Left Ventricle	heart
21	chr14:66028800-66042600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:66028800-66044200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:66029000-66039800	Weak transcription	Fetal Intestine Large	intestine
24	chr14:66029800-66039600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:66030200-66040200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr14:66030200-66040800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:66032000-66041600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:66032000-66042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:66033200-66053600	Weak transcription	Small Intestine	intestine
32	chr14:66034200-66041000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:66034200-66044600	Weak transcription	NHDF-Ad	bronchial
34	chr14:66034200-66045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr14:66034400-66040200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:66034400-66045800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:66034600-66046400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:66035000-66040600	Weak transcription	GM12878-XiMat	blood
39	chr14:66035800-66054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:66035800-66057400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:66036600-66039800	Strong transcription	Dnd41	blood
42	chr14:66036600-66042200	Weak transcription	Pancreas	Pancrea
43	chr14:66036800-66041000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:66036800-66041600	Strong transcription	Primary B cells from cord blood	blood
45	chr14:66037000-66041000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr14:66037400-66041000	Enhancers	Brain Hippocampus Middle	brain
47	chr14:66037400-66041600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr14:66038200-66040000	Enhancers	Brain Substantia Nigra	brain
49	chr14:66038400-66042400	Weak transcription	Brain Germinal Matrix	brain
50	chr14:66038600-66039800	Enhancers	Brain Cingulate Gyrus	brain

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