Variant report

Variant	rs73284170
Chromosome Location	chr14:65987434-65987435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs57134875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309452	0.83[AFR][1000 genomes]
rs58794139	0.83[AFR][1000 genomes]
rs58832122	1.00[AMR][1000 genomes]
rs58925725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59633486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61155946	1.00[AMR][1000 genomes]
rs61187056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226824	1.00[AMR][1000 genomes]
rs73268519	1.00[AFR][1000 genomes]
rs73268522	1.00[AFR][1000 genomes]
rs73268560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268567	1.00[AFR][1000 genomes]
rs73268575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268588	0.91[AFR][1000 genomes]
rs73268592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278048	0.91[AFR][1000 genomes]
rs73278079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278092	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282204	0.83[AFR][1000 genomes]
rs73282270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282301	1.00[AMR][1000 genomes]
rs73282302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65969800-65994600	Weak transcription	Left Ventricle	heart
3	chr14:65976400-65988200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:65979400-65988800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65981000-65988400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:65981200-65994600	Weak transcription	Gastric	stomach
7	chr14:65981400-65996800	Weak transcription	Small Intestine	intestine
8	chr14:65984600-65988200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:65984800-65988400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:65984800-65988800	Weak transcription	Primary T cells from cord blood	blood
11	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:65985400-65994200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:65985800-65990800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:65985800-65994800	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:65986000-65988400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr14:65987400-65987600	Active TSS	Primary hematopoietic stem cells	blood

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