Variant report

Variant	rs73268577
Chromosome Location	chr14:66154138-66154139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66145656..66147261-chr14:66154036..66156276,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs57134875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58925725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61187056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268519	1.00[AFR][1000 genomes]
rs73268522	1.00[AFR][1000 genomes]
rs73268560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268567	1.00[AFR][1000 genomes]
rs73268575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268588	0.91[AFR][1000 genomes]
rs73268592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270664	1.00[AMR][1000 genomes]
rs73270675	1.00[AMR][1000 genomes]
rs73270677	1.00[AMR][1000 genomes]
rs73270682	1.00[AMR][1000 genomes]
rs73284134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:66105000-66157400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:66125600-66157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:66136200-66155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:66138000-66177400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:66139200-66155400	Weak transcription	Primary T cells from cord blood	blood
8	chr14:66141600-66156600	Weak transcription	Fetal Intestine Large	intestine
9	chr14:66143800-66155600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:66144800-66155200	Weak transcription	Dnd41	blood
11	chr14:66147600-66176000	Weak transcription	Stomach Mucosa	stomach
12	chr14:66147800-66170200	Weak transcription	Primary B cells from cord blood	blood
13	chr14:66149000-66155200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:66151200-66154200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:66152400-66154200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:66152400-66154200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:66152600-66154200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr14:66153000-66154200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:66153800-66154200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:66153800-66154400	Weak transcription	Brain Substantia Nigra	brain
21	chr14:66153800-66160200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:66154000-66154200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr14:66154000-66154200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr14:66154000-66170000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links