Variant report

Variant	rs73286112
Chromosome Location	chr14:66026273-66026274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66025175..66028940-chr14:66031643..66034367,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs57134875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309452	0.83[AFR][1000 genomes]
rs58794139	0.83[AFR][1000 genomes]
rs58925725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59633486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61187056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268519	1.00[AFR][1000 genomes]
rs73268522	1.00[AFR][1000 genomes]
rs73268560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268567	1.00[AFR][1000 genomes]
rs73268575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268588	0.91[AFR][1000 genomes]
rs73268592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278092	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282204	0.83[AFR][1000 genomes]
rs73282270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282301	1.00[AMR][1000 genomes]
rs73282302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv2413773	chr14:66026071-66026509	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3310634	chr14:66026241-66026321	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3310635	chr14:66026255-66026318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995200-66028000	Weak transcription	Dnd41	blood
2	chr14:65995400-66061000	Weak transcription	Gastric	stomach
3	chr14:66002400-66028000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:66003000-66028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:66003400-66028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:66005400-66028400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:66008600-66028000	Weak transcription	Primary B cells from cord blood	blood
9	chr14:66013200-66028200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:66015200-66033600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:66016000-66032800	Weak transcription	Small Intestine	intestine
12	chr14:66016000-66041400	Weak transcription	Ovary	ovary
13	chr14:66016600-66028000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:66016600-66033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:66018200-66031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr14:66018600-66027800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:66019400-66028200	Weak transcription	GM12878-XiMat	blood
18	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
19	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
20	chr14:66022400-66028000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:66022400-66028000	Weak transcription	Fetal Intestine Large	intestine
22	chr14:66022400-66033400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:66022600-66026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr14:66022800-66032800	Weak transcription	Adipose Nuclei	Adipose
28	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
29	chr14:66023200-66028200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr14:66023200-66029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:66023200-66033000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:66023200-66040200	Weak transcription	Lung	lung
34	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:66023400-66028200	Weak transcription	Left Ventricle	heart
37	chr14:66023400-66032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:66023600-66031200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain
40	chr14:66023800-66028400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:66024000-66026600	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:66025000-66028000	Weak transcription	Fetal Thymus	thymus
43	chr14:66025200-66026400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr14:66025200-66026400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr14:66025200-66026800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr14:66025400-66026400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr14:66025400-66028000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:66025400-66040400	Weak transcription	Fetal Lung	lung
49	chr14:66025600-66027200	Weak transcription	Brain Anterior Caudate	brain
50	chr14:66025600-66027200	Weak transcription	Brain Inferior Temporal Lobe	brain

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