Variant report

Variant	rs61187056
Chromosome Location	chr14:66049171-66049172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66049169..66051440-chr14:66059588..66062985,3	MCF-7	breast:
2	chr14:66034507..66036127-chr14:66047360..66049371,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs57134875	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58925725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515554	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444883	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268519	0.91[AFR][1000 genomes]
rs73268522	0.91[AFR][1000 genomes]
rs73268560	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268567	0.91[AFR][1000 genomes]
rs73268575	1.00[AMR][1000 genomes]
rs73268577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268580	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268588	0.82[AFR][1000 genomes]
rs73268592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270634	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270637	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270638	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270643	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270664	1.00[AMR][1000 genomes]
rs73270675	1.00[AMR][1000 genomes]
rs73280130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282292	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282299	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282301	1.00[AMR][1000 genomes]
rs73282302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284161	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286112	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286126	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286148	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:66033200-66053600	Weak transcription	Small Intestine	intestine
8	chr14:66035800-66054800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:66035800-66057400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:66039200-66054400	Weak transcription	Primary T cells from cord blood	blood
11	chr14:66039800-66058000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:66039800-66061200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:66041000-66059000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:66041000-66060800	Weak transcription	Dnd41	blood
15	chr14:66041200-66060800	Weak transcription	GM12878-XiMat	blood
16	chr14:66041200-66061000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:66041600-66049400	Weak transcription	Primary B cells from cord blood	blood
18	chr14:66043400-66052000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:66043800-66061000	Weak transcription	Fetal Intestine Small	intestine
20	chr14:66046600-66052400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:66048800-66052000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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