Variant report

Variant	rs73282301
Chromosome Location	chr14:65902556-65902557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57134875	1.00[AMR][1000 genomes]
rs58832122	1.00[AMR][1000 genomes]
rs58925725	1.00[AMR][1000 genomes]
rs59330837	1.00[AMR][1000 genomes]
rs59515554	1.00[AMR][1000 genomes]
rs59633486	1.00[AMR][1000 genomes]
rs60444883	1.00[AMR][1000 genomes]
rs61155946	1.00[AMR][1000 genomes]
rs61187056	1.00[AMR][1000 genomes]
rs61226824	1.00[AMR][1000 genomes]
rs73268560	1.00[AMR][1000 genomes]
rs73278079	1.00[AMR][1000 genomes]
rs73278092	1.00[AMR][1000 genomes]
rs73278096	1.00[AMR][1000 genomes]
rs73278102	1.00[AMR][1000 genomes]
rs73280103	1.00[AMR][1000 genomes]
rs73280111	1.00[AMR][1000 genomes]
rs73280130	1.00[AMR][1000 genomes]
rs73280134	1.00[AMR][1000 genomes]
rs73282270	1.00[AMR][1000 genomes]
rs73282279	1.00[AMR][1000 genomes]
rs73282289	1.00[AMR][1000 genomes]
rs73282292	1.00[AMR][1000 genomes]
rs73282299	1.00[AMR][1000 genomes]
rs73282302	1.00[AMR][1000 genomes]
rs73284108	1.00[AMR][1000 genomes]
rs73284134	1.00[AMR][1000 genomes]
rs73284147	1.00[AMR][1000 genomes]
rs73284154	1.00[AMR][1000 genomes]
rs73284161	1.00[AMR][1000 genomes]
rs73284170	1.00[AMR][1000 genomes]
rs73284186	1.00[AMR][1000 genomes]
rs73286112	1.00[AMR][1000 genomes]
rs73286126	1.00[AMR][1000 genomes]
rs73286127	1.00[AMR][1000 genomes]
rs73286148	1.00[AMR][1000 genomes]
rs73286182	1.00[AMR][1000 genomes]
rs8016432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:65888400-65905400	Weak transcription	Ovary	ovary
5	chr14:65891600-65904000	Weak transcription	Lung	lung
6	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
10	chr14:65898400-65935600	Weak transcription	Gastric	stomach
11	chr14:65899000-65903600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:65899600-65905200	Weak transcription	Psoas Muscle	Psoas
14	chr14:65899600-65909600	Weak transcription	Left Ventricle	heart
15	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:65899800-65903600	Weak transcription	Stomach Mucosa	stomach
17	chr14:65899800-65905000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:65899800-65905200	Weak transcription	Small Intestine	intestine
19	chr14:65899800-65906000	Weak transcription	Placenta	Placenta
20	chr14:65899800-65917600	Weak transcription	Thymus	Thymus
21	chr14:65900000-65903600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:65900000-65917400	Weak transcription	Fetal Thymus	thymus
23	chr14:65900200-65903600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:65900200-65912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:65900400-65904000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:65900400-65912800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:65900600-65903400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr14:65900600-65903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:65900800-65904000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:65901000-65902600	Weak transcription	Fetal Stomach	stomach
31	chr14:65901000-65904400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:65901200-65903400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr14:65901200-65904000	Genic enhancers	Dnd41	blood
34	chr14:65901200-65904200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:65901200-65905400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:65901200-65907400	Weak transcription	HSMM	muscle
37	chr14:65901200-65917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:65901200-65920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:65901400-65903600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr14:65901400-65905800	Weak transcription	Brain Substantia Nigra	brain
41	chr14:65901400-65910800	Weak transcription	Osteobl	bone
42	chr14:65901600-65903000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr14:65901600-65903000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
44	chr14:65901600-65903000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:65901600-65903000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr14:65901600-65903600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:65901800-65902800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:65901800-65903000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr14:65901800-65905200	Weak transcription	NH-A	brain
50	chr14:65901800-65917600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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