Variant report

Variant	rs73282302
Chromosome Location	chr14:65905096-65905097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65692867..65695461-chr14:65904405..65906189,2	MCF-7	breast:
2	chr14:65904077..65906399-chr14:65944065..65947106,4	K562	blood:
3	chr14:65904341..65906356-chr14:65944065..65946546,2	K562	blood:
4	chr14:65894339..65896044-chr14:65904651..65907557,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs57134875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57309452	0.83[AFR][1000 genomes]
rs58794139	0.83[AFR][1000 genomes]
rs58832122	1.00[AMR][1000 genomes]
rs58925725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59330837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59515554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59633486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60444883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61155946	1.00[AMR][1000 genomes]
rs61187056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61226824	1.00[AMR][1000 genomes]
rs73268519	1.00[AFR][1000 genomes]
rs73268522	1.00[AFR][1000 genomes]
rs73268560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278048	0.91[AFR][1000 genomes]
rs73278079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278092	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282204	0.83[AFR][1000 genomes]
rs73282270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282301	1.00[AMR][1000 genomes]
rs73284108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8016432	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:65888400-65905400	Weak transcription	Ovary	ovary
3	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
6	chr14:65898400-65935600	Weak transcription	Gastric	stomach
7	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:65899600-65905200	Weak transcription	Psoas Muscle	Psoas
9	chr14:65899600-65909600	Weak transcription	Left Ventricle	heart
10	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:65899800-65905200	Weak transcription	Small Intestine	intestine
12	chr14:65899800-65906000	Weak transcription	Placenta	Placenta
13	chr14:65899800-65917600	Weak transcription	Thymus	Thymus
14	chr14:65900000-65917400	Weak transcription	Fetal Thymus	thymus
15	chr14:65900200-65912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:65900400-65912800	Weak transcription	Brain Anterior Caudate	brain
17	chr14:65901200-65905400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:65901200-65907400	Weak transcription	HSMM	muscle
19	chr14:65901200-65917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:65901200-65920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:65901400-65905800	Weak transcription	Brain Substantia Nigra	brain
22	chr14:65901400-65910800	Weak transcription	Osteobl	bone
23	chr14:65901800-65905200	Weak transcription	NH-A	brain
24	chr14:65901800-65917600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:65901800-65920200	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:65902200-65927000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr14:65902800-65906000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr14:65903000-65905400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:65903000-65908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr14:65903000-65910200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:65903000-65911600	Weak transcription	Fetal Intestine Large	intestine
33	chr14:65903000-65911600	Weak transcription	Fetal Intestine Small	intestine
34	chr14:65903000-65917800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr14:65903200-65917600	Weak transcription	Fetal Stomach	stomach
36	chr14:65903200-65922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:65903200-65925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr14:65903400-65906000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr14:65903400-65906600	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr14:65903600-65905400	Enhancers	GM12878-XiMat	blood
41	chr14:65903600-65906000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr14:65903600-65906200	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr14:65904000-65905800	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:65904000-65906000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr14:65904000-65906000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:65904200-65905600	Enhancers	Primary T cells from cord blood	blood
47	chr14:65904200-65906000	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr14:65904200-65912600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr14:65904400-65905400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr14:65904400-65905600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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