Variant report

Variant	rs74058562
Chromosome Location	chr14:66162083-66162084
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10130526	0.85[ASN][1000 genomes]
rs10143920	0.85[ASN][1000 genomes]
rs11847101	0.94[ASN][1000 genomes]
rs11849249	0.94[ASN][1000 genomes]
rs11849792	0.98[ASN][1000 genomes]
rs12431562	0.81[ASN][1000 genomes]
rs12431772	1.00[ASN][1000 genomes]
rs12432032	0.81[ASN][1000 genomes]
rs12432422	0.94[ASN][1000 genomes]
rs12432426	0.81[ASN][1000 genomes]
rs12433273	0.81[ASN][1000 genomes]
rs12434375	0.85[ASN][1000 genomes]
rs12434626	0.85[ASN][1000 genomes]
rs12435769	1.00[ASN][1000 genomes]
rs12435809	0.89[ASN][1000 genomes]
rs12435971	0.94[ASN][1000 genomes]
rs12436349	0.81[ASN][1000 genomes]
rs12436402	0.85[ASN][1000 genomes]
rs12436434	0.81[ASN][1000 genomes]
rs12436482	0.81[ASN][1000 genomes]
rs12436677	0.89[ASN][1000 genomes]
rs12436771	0.96[ASN][1000 genomes]
rs12437088	0.81[ASN][1000 genomes]
rs17102708	0.81[ASN][1000 genomes]
rs17102839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17102854	1.00[ASN][1000 genomes]
rs17102894	0.94[ASN][1000 genomes]
rs17102898	0.94[ASN][1000 genomes]
rs17246385	0.89[ASN][1000 genomes]
rs17246441	0.96[ASN][1000 genomes]
rs17246504	0.83[ASN][1000 genomes]
rs17246532	0.92[ASN][1000 genomes]
rs17826892	0.96[ASN][1000 genomes]
rs17826946	0.96[ASN][1000 genomes]
rs17826952	0.96[ASN][1000 genomes]
rs1952605	0.85[ASN][1000 genomes]
rs2073295	0.96[ASN][1000 genomes]
rs2268965	0.92[ASN][1000 genomes]
rs2295360	0.83[ASN][1000 genomes]
rs2300863	0.94[ASN][1000 genomes]
rs2300866	0.94[ASN][1000 genomes]
rs2300870	1.00[ASN][1000 genomes]
rs28496380	1.00[ASN][1000 genomes]
rs2898701	0.94[ASN][1000 genomes]
rs55674739	0.94[AFR][1000 genomes]
rs55698845	0.94[AFR][1000 genomes]
rs55723633	0.84[AFR][1000 genomes]
rs55954698	0.94[AFR][1000 genomes]
rs56258162	0.94[AFR][1000 genomes]
rs56401246	0.83[AFR][1000 genomes]
rs56821971	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs57228058	0.94[AFR][1000 genomes]
rs57283810	0.84[AFR][1000 genomes]
rs58087042	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs59036531	0.94[ASN][1000 genomes]
rs60009307	0.94[AFR][1000 genomes]
rs60393585	0.94[AFR][1000 genomes]
rs60470427	0.94[AFR][1000 genomes]
rs61016861	0.94[AFR][1000 genomes]
rs61417186	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61987778	0.94[ASN][1000 genomes]
rs61987810	0.81[ASN][1000 genomes]
rs74056794	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs74056796	0.94[AFR][1000 genomes]
rs74056798	0.94[AFR][1000 genomes]
rs74056800	0.81[ASN][1000 genomes]
rs74056807	0.89[AFR][1000 genomes]
rs74056811	0.94[AFR][1000 genomes]
rs74056813	0.94[AFR][1000 genomes]
rs74056815	0.94[AFR][1000 genomes]
rs74056816	0.94[AFR][1000 genomes]
rs74056820	0.81[ASN][1000 genomes]
rs74056826	0.89[AFR][1000 genomes]
rs74056829	0.94[AFR][1000 genomes]
rs74056844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74058503	0.84[AFR][1000 genomes]
rs74058505	0.81[ASN][1000 genomes]
rs74058507	0.94[AFR][1000 genomes]
rs74058513	0.84[AFR][1000 genomes]
rs74058518	0.94[AFR][1000 genomes]
rs74058519	0.84[AFR][1000 genomes]
rs74058523	0.94[AFR][1000 genomes]
rs74058524	0.94[AFR][1000 genomes]
rs74058525	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs74058528	0.94[AFR][1000 genomes]
rs74058529	0.84[AFR][1000 genomes]
rs74058536	0.83[AFR][1000 genomes]
rs74058539	0.94[AFR][1000 genomes]
rs74058541	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs74058545	0.94[AFR][1000 genomes]
rs74058546	0.94[AFR][1000 genomes]
rs74058547	0.94[AFR][1000 genomes]
rs74058548	0.94[AFR][1000 genomes]
rs74058549	0.94[AFR][1000 genomes]
rs74058550	0.94[AFR][1000 genomes]
rs74058551	0.94[AFR][1000 genomes]
rs74058553	0.94[AFR][1000 genomes]
rs74058554	0.94[AFR][1000 genomes]
rs74058556	0.94[AFR][1000 genomes]
rs74058557	0.94[AFR][1000 genomes]
rs74058560	1.00[ASN][1000 genomes]
rs74058563	0.94[AFR][1000 genomes]
rs74058564	0.94[AFR][1000 genomes]
rs8004564	0.98[ASN][1000 genomes]
rs956582	0.92[ASN][1000 genomes]
rs997794	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:66138000-66177400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:66147600-66176000	Weak transcription	Stomach Mucosa	stomach
4	chr14:66147800-66170200	Weak transcription	Primary B cells from cord blood	blood
5	chr14:66154000-66170000	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:66156000-66163400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:66156000-66179600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:66156200-66172600	Weak transcription	Primary T cells from cord blood	blood
9	chr14:66160400-66169600	Weak transcription	Fetal Intestine Small	intestine
10	chr14:66160400-66170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:66160400-66170200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:66160800-66174800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:66161200-66172400	Weak transcription	Dnd41	blood
14	chr14:66161600-66174600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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