Variant report

Variant	rs74058536
Chromosome Location	chr14:66082545-66082546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:66066064..66069081-chr14:66080288..66082777,3	MCF-7	breast:
2	chr14:66078999..66081088-chr14:66082459..66085029,2	MCF-7	breast:
3	chr14:66082417..66084676-chr14:66092751..66094403,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12433688	0.83[AFR][1000 genomes]
rs17102688	0.83[AFR][1000 genomes]
rs17102839	0.83[AFR][1000 genomes]
rs55674739	0.88[AFR][1000 genomes]
rs55698845	0.88[AFR][1000 genomes]
rs55954698	0.88[AFR][1000 genomes]
rs56258162	0.88[AFR][1000 genomes]
rs56401246	1.00[AFR][1000 genomes]
rs56821971	0.83[AFR][1000 genomes]
rs57228058	0.88[AFR][1000 genomes]
rs58087042	0.83[AFR][1000 genomes]
rs58160832	0.83[AFR][1000 genomes]
rs60009307	0.88[AFR][1000 genomes]
rs60393585	0.88[AFR][1000 genomes]
rs60470427	0.88[AFR][1000 genomes]
rs61016861	0.88[AFR][1000 genomes]
rs61417186	0.83[AFR][1000 genomes]
rs74056768	0.88[AFR][1000 genomes]
rs74056775	0.83[AFR][1000 genomes]
rs74056782	0.83[AFR][1000 genomes]
rs74056784	0.88[AFR][1000 genomes]
rs74056787	0.83[AFR][1000 genomes]
rs74056794	0.83[AFR][1000 genomes]
rs74056796	0.88[AFR][1000 genomes]
rs74056798	0.88[AFR][1000 genomes]
rs74056807	0.83[AFR][1000 genomes]
rs74056811	0.88[AFR][1000 genomes]
rs74056813	0.88[AFR][1000 genomes]
rs74056815	0.88[AFR][1000 genomes]
rs74056816	0.88[AFR][1000 genomes]
rs74056826	0.83[AFR][1000 genomes]
rs74056829	0.88[AFR][1000 genomes]
rs74058507	0.88[AFR][1000 genomes]
rs74058518	0.88[AFR][1000 genomes]
rs74058523	0.88[AFR][1000 genomes]
rs74058524	0.88[AFR][1000 genomes]
rs74058525	0.83[AFR][1000 genomes]
rs74058528	0.88[AFR][1000 genomes]
rs74058539	0.88[AFR][1000 genomes]
rs74058541	0.83[AFR][1000 genomes]
rs74058545	0.88[AFR][1000 genomes]
rs74058546	0.88[AFR][1000 genomes]
rs74058547	0.88[AFR][1000 genomes]
rs74058548	0.88[AFR][1000 genomes]
rs74058549	0.88[AFR][1000 genomes]
rs74058550	0.88[AFR][1000 genomes]
rs74058551	0.88[AFR][1000 genomes]
rs74058553	0.88[AFR][1000 genomes]
rs74058554	0.88[AFR][1000 genomes]
rs74058556	0.88[AFR][1000 genomes]
rs74058557	0.88[AFR][1000 genomes]
rs74058562	0.83[AFR][1000 genomes]
rs74058563	0.88[AFR][1000 genomes]
rs74058564	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66059200-66082600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:66061800-66099000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:66066200-66084000	Weak transcription	Fetal Intestine Large	intestine
4	chr14:66066600-66084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:66070600-66096200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:66070800-66083600	Weak transcription	GM12878-XiMat	blood
7	chr14:66071800-66082600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:66072200-66082600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr14:66072200-66085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:66072400-66083600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:66072600-66083000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:66073600-66096000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:66075400-66096400	Weak transcription	Adipose Nuclei	Adipose
14	chr14:66077400-66083800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:66077600-66097600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:66077600-66114400	Weak transcription	Ovary	ovary
17	chr14:66078000-66094200	Weak transcription	Fetal Intestine Small	intestine
18	chr14:66078000-66100600	Weak transcription	Brain Angular Gyrus	brain
19	chr14:66079200-66096200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:66079400-66104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:66079600-66082800	Weak transcription	Primary T cells from cord blood	blood
22	chr14:66079600-66096400	Weak transcription	Brain Anterior Caudate	brain
23	chr14:66079600-66104400	Weak transcription	Gastric	stomach
24	chr14:66080000-66100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:66080200-66092200	Weak transcription	Brain Substantia Nigra	brain
26	chr14:66080400-66096600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:66080800-66092200	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
29	chr14:66081000-66083200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:66081000-66084000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr14:66081000-66084000	Weak transcription	Fetal Thymus	thymus
32	chr14:66081000-66096200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:66081400-66096600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:66081400-66100200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
36	chr14:66081600-66094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:66081600-66096600	Weak transcription	NH-A	brain
38	chr14:66081600-66097800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:66081800-66087000	Weak transcription	Osteobl	bone
40	chr14:66081800-66089000	Strong transcription	Dnd41	blood
41	chr14:66081800-66095800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:66081800-66098200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:66081800-66112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:66082200-66091600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr14:66082200-66112600	Weak transcription	NHDF-Ad	bronchial
46	chr14:66082400-66084000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr14:66082400-66085400	Strong transcription	Primary B cells from cord blood	blood

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