Variant report

Variant	rs17102910
Chromosome Location	chr14:66214842-66214843
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65879004..65881155-chr14:66213120..66215142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10083328	0.90[EUR][1000 genomes]
rs10130526	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10131727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10143920	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10151521	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11845391	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11846051	0.90[EUR][1000 genomes]
rs11846827	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11847101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11849249	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11849408	1.00[CEU][hapmap]
rs11849792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12431772	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12432032	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12432422	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12432550	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12434375	1.00[JPT][hapmap]
rs12435809	0.80[ASN][1000 genomes]
rs12435971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12436349	1.00[JPT][hapmap]
rs12436381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12436402	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12436482	1.00[JPT][hapmap]
rs12436677	0.80[ASN][1000 genomes]
rs12436771	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12437088	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17102760	1.00[CEU][hapmap]
rs17102783	1.00[CEU][hapmap]
rs17102839	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17102845	0.87[EUR][1000 genomes]
rs17102894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17102898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17246385	0.80[ASN][1000 genomes]
rs17246441	0.83[ASN][1000 genomes]
rs17246504	0.95[ASN][1000 genomes]
rs17826892	0.83[ASN][1000 genomes]
rs17826946	0.83[ASN][1000 genomes]
rs17826952	0.83[ASN][1000 genomes]
rs1952605	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2073295	0.83[ASN][1000 genomes]
rs2268965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2295360	0.95[ASN][1000 genomes]
rs2300870	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28402125	0.92[EUR][1000 genomes]
rs28489447	0.83[EUR][1000 genomes]
rs28583930	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28666667	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2898701	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4343192	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55853120	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56024518	0.84[AMR][1000 genomes]
rs56182635	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56311314	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59036531	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61987768	0.90[EUR][1000 genomes]
rs61987770	0.90[EUR][1000 genomes]
rs61987773	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987775	0.81[AMR][1000 genomes]
rs61987776	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987778	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61987779	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987781	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987809	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61987810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61987811	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987812	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61987814	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987815	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61987821	0.83[EUR][1000 genomes]
rs61988019	0.85[EUR][1000 genomes]
rs61988021	0.90[EUR][1000 genomes]
rs61988022	0.90[EUR][1000 genomes]
rs6573620	1.00[CEU][hapmap]
rs7143525	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7144234	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7148883	0.90[EUR][1000 genomes]
rs7153718	1.00[CEU][hapmap]
rs7154526	0.90[EUR][1000 genomes]
rs7154876	0.90[EUR][1000 genomes]
rs7155055	1.00[CEU][hapmap]
rs7155169	0.87[EUR][1000 genomes]
rs730127	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7342545	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs74056820	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8004564	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8004852	0.90[EUR][1000 genomes]
rs8019214	1.00[CEU][hapmap]
rs927005	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs956582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs997794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66190400-66217000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr14:66191800-66217800	Weak transcription	Small Intestine	intestine
3	chr14:66193000-66218800	Weak transcription	Colonic Mucosa	Colon
4	chr14:66200600-66215600	Weak transcription	Brain Substantia Nigra	brain
5	chr14:66201200-66216400	Weak transcription	Fetal Thymus	thymus
6	chr14:66201800-66219200	Weak transcription	Brain Anterior Caudate	brain
7	chr14:66202200-66215000	Weak transcription	Psoas Muscle	Psoas
8	chr14:66207400-66215400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:66209400-66215000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:66209400-66217400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr14:66209400-66217600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:66209400-66219200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:66209600-66215200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:66209600-66216600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr14:66209600-66217800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:66209600-66217800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr14:66209600-66219000	Weak transcription	Thymus	Thymus
18	chr14:66209600-66219200	Weak transcription	Stomach Mucosa	stomach
19	chr14:66210600-66217400	Weak transcription	GM12878-XiMat	blood
20	chr14:66210600-66217800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:66210800-66217400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr14:66211000-66218000	Weak transcription	Fetal Intestine Large	intestine
23	chr14:66211800-66217600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:66212400-66217800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:66212600-66217800	Weak transcription	HepG2	liver
26	chr14:66213400-66218000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:66213600-66217600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:66213600-66217800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:66213800-66215600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:66214400-66215200	Weak transcription	Primary T cells from cord blood	blood

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