Variant report

Variant	rs7143525
Chromosome Location	chr14:66178767-66178768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10083328	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[ASN][1000 genomes]
rs10151521	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844728	1.00[ASN][1000 genomes]
rs11845391	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846051	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846827	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846860	1.00[ASN][1000 genomes]
rs11847101	0.87[EUR][1000 genomes]
rs11849249	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11849408	1.00[ASN][1000 genomes]
rs11849792	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs11852179	1.00[ASN][1000 genomes]
rs12432422	0.87[EUR][1000 genomes]
rs12432550	0.85[EUR][1000 genomes]
rs12435971	0.85[EUR][1000 genomes]
rs17102760	1.00[ASN][1000 genomes]
rs17102783	1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17102845	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102894	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17102898	0.87[EUR][1000 genomes]
rs17102910	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17779210	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268965	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28402125	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489447	0.87[EUR][1000 genomes]
rs28583930	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28666667	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898701	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4343192	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55760239	1.00[ASN][1000 genomes]
rs55793205	1.00[ASN][1000 genomes]
rs55853120	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024518	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165076	1.00[ASN][1000 genomes]
rs56182635	0.85[EUR][1000 genomes]
rs56191137	1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56311314	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56682283	1.00[ASN][1000 genomes]
rs59036531	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987775	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987776	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987778	0.85[EUR][1000 genomes]
rs61987779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987809	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987810	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987811	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987812	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987814	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987815	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987821	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987981	1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988019	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988022	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988973	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988979	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988980	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988981	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988982	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988983	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988984	1.00[ASN][1000 genomes]
rs61988987	1.00[ASN][1000 genomes]
rs61988988	1.00[ASN][1000 genomes]
rs61988989	1.00[ASN][1000 genomes]
rs61988990	1.00[ASN][1000 genomes]
rs61988991	1.00[ASN][1000 genomes]
rs61988992	1.00[ASN][1000 genomes]
rs61988993	1.00[ASN][1000 genomes]
rs61988994	1.00[ASN][1000 genomes]
rs61988996	1.00[ASN][1000 genomes]
rs61988997	1.00[ASN][1000 genomes]
rs61988999	1.00[ASN][1000 genomes]
rs61989000	1.00[ASN][1000 genomes]
rs61989001	1.00[ASN][1000 genomes]
rs61989002	1.00[ASN][1000 genomes]
rs61989003	1.00[ASN][1000 genomes]
rs61989004	1.00[ASN][1000 genomes]
rs61989005	1.00[ASN][1000 genomes]
rs61989010	1.00[ASN][1000 genomes]
rs61989038	1.00[ASN][1000 genomes]
rs61990023	1.00[ASN][1000 genomes]
rs61990026	1.00[ASN][1000 genomes]
rs61990027	1.00[ASN][1000 genomes]
rs6573620	1.00[ASN][1000 genomes]
rs7143112	1.00[ASN][1000 genomes]
rs7144234	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148883	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148899	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153718	1.00[ASN][1000 genomes]
rs7154526	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155055	1.00[ASN][1000 genomes]
rs7155169	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7156029	1.00[ASN][1000 genomes]
rs730127	0.85[EUR][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056820	0.87[EUR][1000 genomes]
rs8003093	1.00[ASN][1000 genomes]
rs8004852	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006608	1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8018695	1.00[ASN][1000 genomes]
rs8019214	1.00[ASN][1000 genomes]
rs927005	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956582	0.87[EUR][1000 genomes]
rs997794	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:66156000-66179600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:66169800-66189000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:66170400-66191400	Weak transcription	Gastric	stomach
5	chr14:66170600-66182200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:66170600-66190800	Weak transcription	Small Intestine	intestine
7	chr14:66171600-66191400	Weak transcription	Ovary	ovary
8	chr14:66175200-66180800	Weak transcription	Primary B cells from cord blood	blood
9	chr14:66175200-66188400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:66175600-66180000	Weak transcription	Dnd41	blood
11	chr14:66176800-66179800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:66177600-66189400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr14:66177800-66189000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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