Variant report

Variant	rs11846051
Chromosome Location	chr14:66159981-66159982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10083328	0.95[EUR][1000 genomes]
rs10151521	0.95[EUR][1000 genomes]
rs11845391	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846196	0.86[AMR][1000 genomes]
rs11846827	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11847101	0.87[EUR][1000 genomes]
rs11849249	0.87[EUR][1000 genomes]
rs11849792	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11851934	0.82[AMR][1000 genomes]
rs12432422	0.87[EUR][1000 genomes]
rs12432550	0.85[EUR][1000 genomes]
rs12435971	0.85[EUR][1000 genomes]
rs17102807	0.86[AMR][1000 genomes]
rs17102845	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17102894	0.90[EUR][1000 genomes]
rs17102898	0.87[EUR][1000 genomes]
rs17102910	0.90[EUR][1000 genomes]
rs17779210	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2268965	0.90[EUR][1000 genomes]
rs28402125	0.97[EUR][1000 genomes]
rs28489447	0.87[EUR][1000 genomes]
rs28583930	0.97[EUR][1000 genomes]
rs28666667	0.97[EUR][1000 genomes]
rs2898701	0.87[EUR][1000 genomes]
rs4343192	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55853120	0.97[EUR][1000 genomes]
rs56024518	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56182635	0.85[EUR][1000 genomes]
rs59036531	0.87[EUR][1000 genomes]
rs61987768	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987773	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987775	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61987776	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987778	0.85[EUR][1000 genomes]
rs61987779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987781	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987809	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61987810	0.90[EUR][1000 genomes]
rs61987811	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987812	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61987814	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61987815	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61987821	0.92[EUR][1000 genomes]
rs61987996	0.83[AMR][1000 genomes]
rs61988015	0.86[AMR][1000 genomes]
rs61988016	0.86[AMR][1000 genomes]
rs61988017	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61988019	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61988021	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61988022	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61988973	0.86[EUR][1000 genomes]
rs61988979	0.81[EUR][1000 genomes]
rs61988980	0.81[EUR][1000 genomes]
rs61988981	0.81[EUR][1000 genomes]
rs61988982	0.81[EUR][1000 genomes]
rs61988983	0.81[EUR][1000 genomes]
rs7143525	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144234	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148883	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148899	0.81[EUR][1000 genomes]
rs7154526	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7154876	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7155169	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs730127	0.85[EUR][1000 genomes]
rs7342545	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056820	0.87[EUR][1000 genomes]
rs8004852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8013098	0.83[AMR][1000 genomes]
rs927005	0.97[EUR][1000 genomes]
rs956582	0.87[EUR][1000 genomes]
rs997794	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:66138000-66177400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr14:66147600-66176000	Weak transcription	Stomach Mucosa	stomach
5	chr14:66147800-66170200	Weak transcription	Primary B cells from cord blood	blood
6	chr14:66153800-66160200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:66154000-66170000	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:66156000-66160000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:66156000-66161200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:66156000-66163400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:66156000-66179600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:66156200-66160200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:66156200-66172600	Weak transcription	Primary T cells from cord blood	blood
14	chr14:66157800-66160000	Weak transcription	Fetal Intestine Small	intestine
15	chr14:66158200-66160200	Weak transcription	Dnd41	blood

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