Variant report

Variant	rs61988980
Chromosome Location	chr14:66260070-66260071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65877493..65879893-chr14:66259513..66261603,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10083328	1.00[ASN][1000 genomes]
rs10151521	1.00[ASN][1000 genomes]
rs11845391	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846051	0.81[EUR][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846827	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17102845	1.00[ASN][1000 genomes]
rs17779210	1.00[ASN][1000 genomes]
rs28402125	1.00[ASN][1000 genomes]
rs28583930	1.00[ASN][1000 genomes]
rs28666667	1.00[ASN][1000 genomes]
rs4343192	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55760239	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853120	1.00[ASN][1000 genomes]
rs56024518	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165076	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311314	1.00[ASN][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987770	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987773	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987775	1.00[ASN][1000 genomes]
rs61987776	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987779	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987781	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987809	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61987811	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987812	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61987814	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61987815	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61987821	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	1.00[ASN][1000 genomes]
rs61988019	1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988022	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988973	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988982	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988983	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988984	1.00[ASN][1000 genomes]
rs61988987	1.00[ASN][1000 genomes]
rs61988988	1.00[ASN][1000 genomes]
rs61988989	1.00[ASN][1000 genomes]
rs61988990	1.00[ASN][1000 genomes]
rs61988991	1.00[ASN][1000 genomes]
rs61988992	1.00[ASN][1000 genomes]
rs61988993	1.00[ASN][1000 genomes]
rs61988994	1.00[ASN][1000 genomes]
rs61988996	1.00[ASN][1000 genomes]
rs61988997	1.00[ASN][1000 genomes]
rs61988999	1.00[ASN][1000 genomes]
rs61989000	1.00[ASN][1000 genomes]
rs61989001	1.00[ASN][1000 genomes]
rs61989002	1.00[ASN][1000 genomes]
rs61989003	1.00[ASN][1000 genomes]
rs61989004	1.00[ASN][1000 genomes]
rs61989005	1.00[ASN][1000 genomes]
rs61989010	1.00[ASN][1000 genomes]
rs61989038	1.00[ASN][1000 genomes]
rs6573620	1.00[ASN][1000 genomes]
rs7143525	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144234	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148883	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148899	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154526	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154876	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155055	1.00[ASN][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004852	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006608	1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8019214	1.00[ASN][1000 genomes]
rs927005	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv456328	chr14:66259394-66287974	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv564952	chr14:66259394-66287974	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1038849	chr14:66259700-66329919	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66256600-66260200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr14:66258600-66260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:66258600-66265600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:66258800-66268800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:66259000-66261200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:66259000-66261400	Weak transcription	Right Atrium	heart
7	chr14:66259400-66261600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:66259400-66265000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:66259800-66260600	Enhancers	Spleen	Spleen

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