Variant report

Variant	rs6573620
Chromosome Location	chr14:66063395-66063396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:66062925..66064543-chr14:66085225..66086774,2	MCF-7	breast:
2	chr14:66060976..66063420-chr14:66066312..66068203,2	MCF-7	breast:
3	chr14:66055552..66057835-chr14:66062107..66064874,2	MCF-7	breast:

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10083328	1.00[ASN][1000 genomes]
rs10131727	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10138701	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151521	1.00[ASN][1000 genomes]
rs10483783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11844089	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11844728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11845391	1.00[ASN][1000 genomes]
rs11846196	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11846860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11847101	1.00[CEU][hapmap]
rs11848647	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11849408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849792	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11851934	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12435971	1.00[CEU][hapmap]
rs12436381	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17102714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17102760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102807	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102845	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17102894	1.00[CEU][hapmap]
rs17102898	1.00[CEU][hapmap]
rs17102910	1.00[CEU][hapmap]
rs17779210	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268965	1.00[CEU][hapmap]
rs28402125	1.00[ASN][1000 genomes]
rs28583930	1.00[ASN][1000 genomes]
rs28666667	1.00[ASN][1000 genomes]
rs4343192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs55648350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760239	1.00[ASN][1000 genomes]
rs55793205	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853120	1.00[ASN][1000 genomes]
rs55948453	1.00[ASN][1000 genomes]
rs56024518	1.00[ASN][1000 genomes]
rs56165076	1.00[ASN][1000 genomes]
rs56191137	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56192128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311314	1.00[ASN][1000 genomes]
rs56682283	1.00[ASN][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61987770	1.00[ASN][1000 genomes]
rs61987773	1.00[ASN][1000 genomes]
rs61987775	1.00[ASN][1000 genomes]
rs61987776	1.00[ASN][1000 genomes]
rs61987779	1.00[ASN][1000 genomes]
rs61987781	1.00[ASN][1000 genomes]
rs61987809	1.00[ASN][1000 genomes]
rs61987811	1.00[ASN][1000 genomes]
rs61987812	1.00[ASN][1000 genomes]
rs61987814	1.00[ASN][1000 genomes]
rs61987815	1.00[ASN][1000 genomes]
rs61987821	1.00[ASN][1000 genomes]
rs61987981	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987989	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987991	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987995	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987996	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988015	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988016	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988017	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988019	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988022	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988973	1.00[ASN][1000 genomes]
rs61988979	1.00[ASN][1000 genomes]
rs61988980	1.00[ASN][1000 genomes]
rs61988981	1.00[ASN][1000 genomes]
rs61988982	1.00[ASN][1000 genomes]
rs61988983	1.00[ASN][1000 genomes]
rs61988984	1.00[ASN][1000 genomes]
rs61988987	1.00[ASN][1000 genomes]
rs61988988	1.00[ASN][1000 genomes]
rs61988989	1.00[ASN][1000 genomes]
rs61988990	1.00[ASN][1000 genomes]
rs61988991	1.00[ASN][1000 genomes]
rs61988992	1.00[ASN][1000 genomes]
rs61988993	1.00[ASN][1000 genomes]
rs61988994	1.00[ASN][1000 genomes]
rs61988996	1.00[ASN][1000 genomes]
rs61988997	1.00[ASN][1000 genomes]
rs61988999	1.00[ASN][1000 genomes]
rs61989000	1.00[ASN][1000 genomes]
rs61989001	1.00[ASN][1000 genomes]
rs61989002	1.00[ASN][1000 genomes]
rs61989003	1.00[ASN][1000 genomes]
rs61989004	1.00[ASN][1000 genomes]
rs61989005	1.00[ASN][1000 genomes]
rs61989970	1.00[ASN][1000 genomes]
rs61989971	1.00[ASN][1000 genomes]
rs61989973	1.00[ASN][1000 genomes]
rs61989974	1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	1.00[ASN][1000 genomes]
rs61989993	1.00[ASN][1000 genomes]
rs61989998	1.00[ASN][1000 genomes]
rs61990000	1.00[ASN][1000 genomes]
rs61990023	1.00[ASN][1000 genomes]
rs61990026	1.00[ASN][1000 genomes]
rs61990027	1.00[ASN][1000 genomes]
rs7143112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7143525	1.00[ASN][1000 genomes]
rs7144234	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7148883	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7148899	1.00[ASN][1000 genomes]
rs7150782	1.00[ASN][1000 genomes]
rs7153718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154526	1.00[ASN][1000 genomes]
rs7154876	1.00[ASN][1000 genomes]
rs7155055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156029	1.00[ASN][1000 genomes]
rs7159582	1.00[ASN][1000 genomes]
rs730127	1.00[CEU][hapmap]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8003093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004852	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8005892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8006608	1.00[ASN][1000 genomes]
rs8008705	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013098	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018695	1.00[ASN][1000 genomes]
rs8019214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927005	1.00[ASN][1000 genomes]
rs956582	1.00[CEU][hapmap]
rs997794	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66058200-66079000	Weak transcription	Primary T cells from cord blood	blood
2	chr14:66058600-66070600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:66059200-66082600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:66061400-66065600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr14:66061400-66065800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:66061400-66066000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:66061600-66065600	Weak transcription	Stomach Mucosa	stomach
8	chr14:66061800-66065200	Weak transcription	A549	lung
9	chr14:66061800-66065400	Weak transcription	Adipose Nuclei	Adipose
10	chr14:66061800-66066200	Weak transcription	Fetal Intestine Small	intestine
11	chr14:66061800-66081800	Weak transcription	Dnd41	blood
12	chr14:66061800-66099000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:66062000-66082400	Weak transcription	Primary B cells from cord blood	blood

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