Variant report

Variant	rs11846860
Chromosome Location	chr14:65972429-65972430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65960132..65963977-chr14:65971617..65974419,3	MCF-7	breast:
2	chr14:65964884..65967338-chr14:65969544..65973454,5	MCF-7	breast:
3	chr14:65948089..65950206-chr14:65970318..65973170,3	MCF-7	breast:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10131727	1.00[CEU][hapmap]
rs10135541	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844089	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845391	1.00[ASN][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11848647	0.84[EUR][1000 genomes]
rs11849408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs11852179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436381	1.00[CEU][hapmap]
rs17102714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17102845	1.00[ASN][1000 genomes]
rs17779210	1.00[ASN][1000 genomes]
rs2153482	1.00[ASN][1000 genomes]
rs4902384	1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55714222	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780087	1.00[ASN][1000 genomes]
rs55793205	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917158	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948453	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158541	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191137	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56348725	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682283	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	1.00[ASN][1000 genomes]
rs61987770	1.00[ASN][1000 genomes]
rs61987773	1.00[ASN][1000 genomes]
rs61987775	1.00[ASN][1000 genomes]
rs61987776	1.00[ASN][1000 genomes]
rs61987981	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	1.00[ASN][1000 genomes]
rs61988019	1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	1.00[ASN][1000 genomes]
rs61988022	1.00[ASN][1000 genomes]
rs61988967	1.00[ASN][1000 genomes]
rs61988970	1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	1.00[ASN][1000 genomes]
rs61989032	1.00[ASN][1000 genomes]
rs61989036	1.00[ASN][1000 genomes]
rs61989057	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989059	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989961	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989962	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989963	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989967	0.84[EUR][1000 genomes]
rs61989969	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989970	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989971	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989973	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989974	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989993	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989998	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990000	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990023	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990026	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990027	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs6573620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7143112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143525	1.00[ASN][1000 genomes]
rs7144234	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7148883	1.00[ASN][1000 genomes]
rs7150782	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154526	1.00[ASN][1000 genomes]
rs7154876	1.00[ASN][1000 genomes]
rs7155055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7156029	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160754	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs746835	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs747540	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004507	1.00[ASN][1000 genomes]
rs8004852	1.00[ASN][1000 genomes]
rs8005892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8013585	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018695	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:65950000-65973400	Weak transcription	Gastric	stomach
3	chr14:65963600-65973800	Weak transcription	Primary B cells from cord blood	blood
4	chr14:65963600-65975000	Weak transcription	Fetal Intestine Small	intestine
5	chr14:65963600-65975800	Weak transcription	Primary T cells from cord blood	blood
6	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65965000-65973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:65968200-65973600	Weak transcription	Small Intestine	intestine
9	chr14:65968200-65974800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:65968400-65973600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:65968400-65974200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:65969800-65973600	Weak transcription	Lung	lung
13	chr14:65969800-65978800	Weak transcription	Ovary	ovary
14	chr14:65969800-65980800	Weak transcription	Pancreas	Pancrea
15	chr14:65969800-65994600	Weak transcription	Left Ventricle	heart
16	chr14:65970000-65973800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:65970200-65975600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:65970200-65985400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:65970200-65985400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:65970400-65981600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:65970600-65974200	Weak transcription	Colon Smooth Muscle	Colon
22	chr14:65970800-65973600	Weak transcription	Stomach Mucosa	stomach
23	chr14:65971000-65973600	Weak transcription	GM12878-XiMat	blood
24	chr14:65971400-65984200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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