Variant report

Variant	rs56158541
Chromosome Location	chr14:65832530-65832531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65821204..65823382-chr14:65830299..65832860,2	MCF-7	breast:
2	chr14:65829777..65831918-chr14:65832048..65833955,2	MCF-7	breast:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10135541	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[ASN][1000 genomes]
rs11844089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844728	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846860	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849408	1.00[ASN][1000 genomes]
rs11852179	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270537	1.00[ASN][1000 genomes]
rs1272725	1.00[ASN][1000 genomes]
rs17102714	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102760	1.00[ASN][1000 genomes]
rs17102783	1.00[ASN][1000 genomes]
rs2151756	1.00[ASN][1000 genomes]
rs2153482	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902378	1.00[ASN][1000 genomes]
rs4902379	1.00[ASN][1000 genomes]
rs4902380	1.00[ASN][1000 genomes]
rs4902381	1.00[ASN][1000 genomes]
rs4902384	1.00[ASN][1000 genomes]
rs55714222	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759426	1.00[ASN][1000 genomes]
rs55780087	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55793205	1.00[ASN][1000 genomes]
rs55865853	1.00[ASN][1000 genomes]
rs55888656	1.00[ASN][1000 genomes]
rs55911819	1.00[ASN][1000 genomes]
rs55917158	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948453	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56030127	1.00[ASN][1000 genomes]
rs56152095	1.00[ASN][1000 genomes]
rs56191137	1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56348725	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682283	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987805	1.00[ASN][1000 genomes]
rs61987837	1.00[ASN][1000 genomes]
rs61987838	1.00[ASN][1000 genomes]
rs61987841	1.00[ASN][1000 genomes]
rs61987844	1.00[ASN][1000 genomes]
rs61987845	1.00[ASN][1000 genomes]
rs61987846	1.00[ASN][1000 genomes]
rs61987847	1.00[ASN][1000 genomes]
rs61987851	1.00[ASN][1000 genomes]
rs61987852	1.00[ASN][1000 genomes]
rs61987853	1.00[ASN][1000 genomes]
rs61987854	1.00[ASN][1000 genomes]
rs61987855	1.00[ASN][1000 genomes]
rs61987856	1.00[ASN][1000 genomes]
rs61987857	1.00[ASN][1000 genomes]
rs61987858	1.00[ASN][1000 genomes]
rs61987859	1.00[ASN][1000 genomes]
rs61987981	1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61988960	1.00[ASN][1000 genomes]
rs61988961	1.00[ASN][1000 genomes]
rs61988962	1.00[ASN][1000 genomes]
rs61988967	1.00[ASN][1000 genomes]
rs61988970	1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	1.00[ASN][1000 genomes]
rs61989032	1.00[ASN][1000 genomes]
rs61989036	1.00[ASN][1000 genomes]
rs61989057	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989059	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989961	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989962	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989964	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61989967	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61989969	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989970	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989971	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989973	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989974	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989993	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989998	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990000	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990002	0.86[EUR][1000 genomes]
rs61990023	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990026	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990027	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs7143112	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147344	1.00[ASN][1000 genomes]
rs7150782	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153718	1.00[ASN][1000 genomes]
rs7156029	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159582	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160754	0.94[EUR][1000 genomes]
rs7161058	1.00[ASN][1000 genomes]
rs746835	1.00[ASN][1000 genomes]
rs747540	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003093	1.00[ASN][1000 genomes]
rs8004507	1.00[ASN][1000 genomes]
rs8005892	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013585	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018695	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65822600-65834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:65824400-65839800	Weak transcription	Primary T cells from cord blood	blood
3	chr14:65824600-65833200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:65824600-65839800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65824800-65836200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:65826400-65840000	Weak transcription	Brain Substantia Nigra	brain
7	chr14:65827800-65832800	Weak transcription	GM12878-XiMat	blood
8	chr14:65828000-65833200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:65829200-65840000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:65829400-65833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:65829400-65834000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:65831600-65833600	Weak transcription	H9 Cell Line	embryonic stem cell

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