Variant report

Variant	rs11844728
Chromosome Location	chr14:65965355-65965356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65963092..65965486-chr14:65966125..65968335,2	MCF-7	breast:
2	chr14:65964884..65967338-chr14:65969544..65973454,5	MCF-7	breast:
3	chr14:65952323..65954709-chr14:65963629..65966415,2	MCF-7	breast:
4	chr14:65964882..65967271-chr14:65968694..65970645,2	MCF-7	breast:
5	chr14:65959431..65962264-chr14:65964141..65966912,2	MCF-7	breast:

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10131727	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10135541	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844089	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845391	1.00[ASN][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11846860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848647	0.84[EUR][1000 genomes]
rs11849408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs11852179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436381	1.00[CEU][hapmap]
rs17102714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17102845	1.00[ASN][1000 genomes]
rs17779210	1.00[ASN][1000 genomes]
rs2153482	1.00[ASN][1000 genomes]
rs4902384	1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55714222	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780087	1.00[ASN][1000 genomes]
rs55793205	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917158	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948453	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158541	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191137	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56348725	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682283	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	1.00[ASN][1000 genomes]
rs61987770	1.00[ASN][1000 genomes]
rs61987773	1.00[ASN][1000 genomes]
rs61987775	1.00[ASN][1000 genomes]
rs61987854	1.00[ASN][1000 genomes]
rs61987855	1.00[ASN][1000 genomes]
rs61987856	1.00[ASN][1000 genomes]
rs61987857	1.00[ASN][1000 genomes]
rs61987858	1.00[ASN][1000 genomes]
rs61987859	1.00[ASN][1000 genomes]
rs61987981	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	1.00[ASN][1000 genomes]
rs61988019	1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	1.00[ASN][1000 genomes]
rs61988022	1.00[ASN][1000 genomes]
rs61988960	1.00[ASN][1000 genomes]
rs61988961	1.00[ASN][1000 genomes]
rs61988962	1.00[ASN][1000 genomes]
rs61988967	1.00[ASN][1000 genomes]
rs61988970	1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	1.00[ASN][1000 genomes]
rs61989032	1.00[ASN][1000 genomes]
rs61989036	1.00[ASN][1000 genomes]
rs61989057	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989059	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989961	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989962	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989963	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989967	0.84[EUR][1000 genomes]
rs61989969	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989970	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989971	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989973	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989974	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989993	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989998	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990000	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61990023	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990026	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990027	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs6573620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7143112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143525	1.00[ASN][1000 genomes]
rs7144234	1.00[ASN][1000 genomes]
rs7148883	1.00[ASN][1000 genomes]
rs7150782	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154526	1.00[ASN][1000 genomes]
rs7154876	1.00[ASN][1000 genomes]
rs7155055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7156029	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160754	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs746835	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs747540	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004507	1.00[ASN][1000 genomes]
rs8004852	1.00[ASN][1000 genomes]
rs8005892	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8013585	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018695	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
2	chr14:65939000-65969400	Weak transcription	Dnd41	blood
3	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:65949600-65970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr14:65950000-65966000	Weak transcription	Psoas Muscle	Psoas
6	chr14:65950000-65969400	Weak transcription	NH-A	brain
7	chr14:65950000-65973400	Weak transcription	Gastric	stomach
8	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
9	chr14:65957600-65967800	Weak transcription	Small Intestine	intestine
10	chr14:65960600-65967800	Weak transcription	Brain Substantia Nigra	brain
11	chr14:65962200-65969400	Weak transcription	Osteobl	bone
12	chr14:65962200-65969600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:65963600-65973800	Weak transcription	Primary B cells from cord blood	blood
14	chr14:65963600-65975000	Weak transcription	Fetal Intestine Small	intestine
15	chr14:65963600-65975800	Weak transcription	Primary T cells from cord blood	blood
16	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65963800-65966000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:65963800-65967800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:65963800-65968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:65964600-65965600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:65964800-65969400	Enhancers	GM12878-XiMat	blood
22	chr14:65965000-65965600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:65965000-65965800	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:65965000-65966000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:65965000-65967400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:65965000-65968000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:65965000-65973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:65965200-65965400	Enhancers	Brain Anterior Caudate	brain
29	chr14:65965200-65965600	Enhancers	Brain Hippocampus Middle	brain

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