Variant report

Variant	rs61989993
Chromosome Location	chr14:65899526-65899527
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65879008..65881327-chr14:65899044..65901379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10135541	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[ASN][1000 genomes]
rs11844089	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844728	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846860	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849408	1.00[ASN][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs11852179	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270537	1.00[ASN][1000 genomes]
rs1272725	1.00[ASN][1000 genomes]
rs17102714	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102760	1.00[ASN][1000 genomes]
rs17102783	1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17779210	1.00[ASN][1000 genomes]
rs2151756	1.00[ASN][1000 genomes]
rs2153482	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902378	1.00[ASN][1000 genomes]
rs4902379	1.00[ASN][1000 genomes]
rs4902380	1.00[ASN][1000 genomes]
rs4902381	1.00[ASN][1000 genomes]
rs4902384	1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55714222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55759426	1.00[ASN][1000 genomes]
rs55780087	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55793205	1.00[ASN][1000 genomes]
rs55865853	1.00[ASN][1000 genomes]
rs55888656	1.00[ASN][1000 genomes]
rs55911819	1.00[ASN][1000 genomes]
rs55917158	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55948453	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56030127	1.00[ASN][1000 genomes]
rs56152095	1.00[ASN][1000 genomes]
rs56158541	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56191137	1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56348725	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682283	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987805	1.00[ASN][1000 genomes]
rs61987837	1.00[ASN][1000 genomes]
rs61987838	1.00[ASN][1000 genomes]
rs61987841	1.00[ASN][1000 genomes]
rs61987844	1.00[ASN][1000 genomes]
rs61987845	1.00[ASN][1000 genomes]
rs61987846	1.00[ASN][1000 genomes]
rs61987847	1.00[ASN][1000 genomes]
rs61987851	1.00[ASN][1000 genomes]
rs61987852	1.00[ASN][1000 genomes]
rs61987853	1.00[ASN][1000 genomes]
rs61987854	1.00[ASN][1000 genomes]
rs61987855	1.00[ASN][1000 genomes]
rs61987856	1.00[ASN][1000 genomes]
rs61987857	1.00[ASN][1000 genomes]
rs61987858	1.00[ASN][1000 genomes]
rs61987859	1.00[ASN][1000 genomes]
rs61987981	1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	1.00[ASN][1000 genomes]
rs61988960	1.00[ASN][1000 genomes]
rs61988961	1.00[ASN][1000 genomes]
rs61988962	1.00[ASN][1000 genomes]
rs61988967	1.00[ASN][1000 genomes]
rs61988970	1.00[ASN][1000 genomes]
rs61989027	1.00[ASN][1000 genomes]
rs61989030	1.00[ASN][1000 genomes]
rs61989032	1.00[ASN][1000 genomes]
rs61989036	1.00[ASN][1000 genomes]
rs61989057	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989059	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989961	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989962	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989963	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989964	1.00[ASN][1000 genomes]
rs61989967	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61989969	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989970	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989973	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989975	1.00[ASN][1000 genomes]
rs61989977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989998	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990000	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990002	0.89[EUR][1000 genomes]
rs61990023	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990026	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990027	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573606	1.00[ASN][1000 genomes]
rs6573620	1.00[ASN][1000 genomes]
rs7143112	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147344	1.00[ASN][1000 genomes]
rs7150782	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153718	1.00[ASN][1000 genomes]
rs7155055	1.00[ASN][1000 genomes]
rs7156029	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159582	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160754	0.92[EUR][1000 genomes]
rs7161058	1.00[ASN][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs746835	1.00[ASN][1000 genomes]
rs747540	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003093	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8004507	1.00[ASN][1000 genomes]
rs8005892	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8013585	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018695	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019214	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:65888400-65905400	Weak transcription	Ovary	ovary
9	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:65891200-65900400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:65891600-65904000	Weak transcription	Lung	lung
12	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:65893600-65902200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:65895600-65899600	Weak transcription	Brain Angular Gyrus	brain
17	chr14:65896000-65899800	Weak transcription	Primary T cells from cord blood	blood
18	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
19	chr14:65898000-65899600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:65898000-65899600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:65898000-65901200	Enhancers	Dnd41	blood
22	chr14:65898200-65899600	Enhancers	Brain Anterior Caudate	brain
23	chr14:65898400-65899800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:65898400-65900200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr14:65898400-65900200	Enhancers	K562	blood
26	chr14:65898400-65900800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:65898400-65901400	Enhancers	Osteobl	bone
28	chr14:65898400-65901600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr14:65898400-65935600	Weak transcription	Gastric	stomach
30	chr14:65898600-65899600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:65898600-65899600	Enhancers	GM12878-XiMat	blood
32	chr14:65898600-65899800	Enhancers	NH-A	brain
33	chr14:65898600-65900800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:65898800-65899600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:65898800-65899600	Enhancers	Brain Substantia Nigra	brain
36	chr14:65898800-65899800	Enhancers	Stomach Mucosa	stomach
37	chr14:65898800-65900200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:65898800-65900400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr14:65898800-65900400	Enhancers	Adipose Nuclei	Adipose
40	chr14:65898800-65901200	Enhancers	Primary B cells from peripheral blood	blood
41	chr14:65898800-65901200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr14:65899000-65899600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr14:65899000-65899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr14:65899000-65899800	Enhancers	Placenta	Placenta
45	chr14:65899000-65900000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:65899000-65901000	Enhancers	Brain Cingulate Gyrus	brain
47	chr14:65899000-65902200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:65899000-65903600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr14:65899200-65899600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr14:65899200-65899600	Enhancers	Psoas Muscle	Psoas

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