Variant report

Variant	rs927005
Chromosome Location	chr14:66219082-66219083
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10083328	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[ASN][1000 genomes]
rs10151521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845391	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846051	0.97[EUR][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846827	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847101	0.90[EUR][1000 genomes]
rs11849249	0.90[EUR][1000 genomes]
rs11849408	1.00[ASN][1000 genomes]
rs11849792	0.90[EUR][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs12432422	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12432550	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12435971	0.88[EUR][1000 genomes]
rs17102760	1.00[ASN][1000 genomes]
rs17102783	1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17102845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102894	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17102898	0.90[EUR][1000 genomes]
rs17102910	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17779210	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268965	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28402125	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489447	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28583930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28666667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898701	0.90[EUR][1000 genomes]
rs4343192	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55760239	1.00[ASN][1000 genomes]
rs55793205	1.00[ASN][1000 genomes]
rs55853120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024518	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165076	1.00[ASN][1000 genomes]
rs56182635	0.88[EUR][1000 genomes]
rs56191137	1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56311314	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59036531	0.90[EUR][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987770	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987773	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987775	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987776	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987778	0.88[EUR][1000 genomes]
rs61987779	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987781	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987809	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987810	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61987811	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987812	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987814	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987815	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987821	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987981	1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988019	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988022	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988973	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988979	1.00[ASN][1000 genomes]
rs61988980	1.00[ASN][1000 genomes]
rs61988981	1.00[ASN][1000 genomes]
rs61988982	1.00[ASN][1000 genomes]
rs61988983	1.00[ASN][1000 genomes]
rs61988984	1.00[ASN][1000 genomes]
rs61988987	1.00[ASN][1000 genomes]
rs61988988	1.00[ASN][1000 genomes]
rs61988989	1.00[ASN][1000 genomes]
rs61988990	1.00[ASN][1000 genomes]
rs61988991	1.00[ASN][1000 genomes]
rs61988992	1.00[ASN][1000 genomes]
rs61988993	1.00[ASN][1000 genomes]
rs61988994	1.00[ASN][1000 genomes]
rs61988996	1.00[ASN][1000 genomes]
rs61988997	1.00[ASN][1000 genomes]
rs61988999	1.00[ASN][1000 genomes]
rs61989000	1.00[ASN][1000 genomes]
rs61989001	1.00[ASN][1000 genomes]
rs61989002	1.00[ASN][1000 genomes]
rs61989003	1.00[ASN][1000 genomes]
rs61989004	1.00[ASN][1000 genomes]
rs61989005	1.00[ASN][1000 genomes]
rs61989010	1.00[ASN][1000 genomes]
rs61989038	1.00[ASN][1000 genomes]
rs61990027	1.00[ASN][1000 genomes]
rs6573620	1.00[ASN][1000 genomes]
rs7143525	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144234	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148883	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148899	1.00[ASN][1000 genomes]
rs7153718	1.00[ASN][1000 genomes]
rs7154526	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154876	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155055	1.00[ASN][1000 genomes]
rs7155169	0.95[EUR][1000 genomes]
rs730127	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056820	0.90[EUR][1000 genomes]
rs8003093	1.00[ASN][1000 genomes]
rs8004852	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006608	1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8019214	1.00[ASN][1000 genomes]
rs956582	0.90[EUR][1000 genomes]
rs997794	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66201800-66219200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:66209400-66219200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:66209600-66219200	Weak transcription	Stomach Mucosa	stomach
4	chr14:66215600-66239800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:66217400-66220200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr14:66217400-66221000	Enhancers	Fetal Intestine Small	intestine
7	chr14:66217800-66219600	Enhancers	HepG2	liver
8	chr14:66217800-66220400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr14:66218000-66219200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:66218000-66221000	Enhancers	Fetal Intestine Large	intestine
11	chr14:66218400-66219200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:66218400-66219200	Weak transcription	Small Intestine	intestine
13	chr14:66218400-66220200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:66218800-66219600	Enhancers	Colonic Mucosa	Colon

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