Variant report

Variant	rs61987812
Chromosome Location	chr14:66216826-66216827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10083328	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10138701	1.00[ASN][1000 genomes]
rs10151521	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845391	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846051	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11846196	1.00[ASN][1000 genomes]
rs11846827	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847101	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11849249	0.90[EUR][1000 genomes]
rs11849408	1.00[ASN][1000 genomes]
rs11849792	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11851934	1.00[ASN][1000 genomes]
rs12432422	0.90[EUR][1000 genomes]
rs12432550	0.88[EUR][1000 genomes]
rs12435971	0.88[EUR][1000 genomes]
rs17102760	1.00[ASN][1000 genomes]
rs17102783	1.00[ASN][1000 genomes]
rs17102807	1.00[ASN][1000 genomes]
rs17102845	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17102894	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17102898	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17102910	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17779210	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268965	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28402125	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489447	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28583930	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28666667	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898701	0.90[EUR][1000 genomes]
rs4343192	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55648350	1.00[ASN][1000 genomes]
rs55760239	1.00[ASN][1000 genomes]
rs55793205	1.00[ASN][1000 genomes]
rs55853120	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024518	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165076	1.00[ASN][1000 genomes]
rs56182635	0.88[EUR][1000 genomes]
rs56191137	1.00[ASN][1000 genomes]
rs56192128	1.00[ASN][1000 genomes]
rs56311314	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59036531	0.90[EUR][1000 genomes]
rs61987767	1.00[ASN][1000 genomes]
rs61987768	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987770	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987773	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987775	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987776	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987778	0.88[EUR][1000 genomes]
rs61987779	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987781	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987810	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61987811	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987821	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987981	1.00[ASN][1000 genomes]
rs61987982	1.00[ASN][1000 genomes]
rs61987985	1.00[ASN][1000 genomes]
rs61987987	1.00[ASN][1000 genomes]
rs61987988	1.00[ASN][1000 genomes]
rs61987989	1.00[ASN][1000 genomes]
rs61987991	1.00[ASN][1000 genomes]
rs61987995	1.00[ASN][1000 genomes]
rs61987996	1.00[ASN][1000 genomes]
rs61988015	1.00[ASN][1000 genomes]
rs61988016	1.00[ASN][1000 genomes]
rs61988017	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988019	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988020	1.00[ASN][1000 genomes]
rs61988021	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988022	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988973	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988979	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988980	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988981	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988982	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988983	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61988984	1.00[ASN][1000 genomes]
rs61988987	1.00[ASN][1000 genomes]
rs61988988	1.00[ASN][1000 genomes]
rs61988989	1.00[ASN][1000 genomes]
rs61988990	1.00[ASN][1000 genomes]
rs61988991	1.00[ASN][1000 genomes]
rs61988992	1.00[ASN][1000 genomes]
rs61988993	1.00[ASN][1000 genomes]
rs61988994	1.00[ASN][1000 genomes]
rs61988996	1.00[ASN][1000 genomes]
rs61988997	1.00[ASN][1000 genomes]
rs61988999	1.00[ASN][1000 genomes]
rs61989000	1.00[ASN][1000 genomes]
rs61989001	1.00[ASN][1000 genomes]
rs61989002	1.00[ASN][1000 genomes]
rs61989003	1.00[ASN][1000 genomes]
rs61989004	1.00[ASN][1000 genomes]
rs61989005	1.00[ASN][1000 genomes]
rs61989010	1.00[ASN][1000 genomes]
rs61989038	1.00[ASN][1000 genomes]
rs61990027	1.00[ASN][1000 genomes]
rs6573620	1.00[ASN][1000 genomes]
rs7143525	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144234	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148883	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148899	1.00[ASN][1000 genomes]
rs7153718	1.00[ASN][1000 genomes]
rs7154526	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154876	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155055	1.00[ASN][1000 genomes]
rs7155169	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs730127	0.88[EUR][1000 genomes]
rs73268558	1.00[ASN][1000 genomes]
rs7342545	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74056820	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8003093	1.00[ASN][1000 genomes]
rs8004852	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006608	1.00[ASN][1000 genomes]
rs8008705	1.00[ASN][1000 genomes]
rs8013098	1.00[ASN][1000 genomes]
rs8019214	1.00[ASN][1000 genomes]
rs927005	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs956582	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs997794	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66190400-66217000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr14:66191800-66217800	Weak transcription	Small Intestine	intestine
3	chr14:66193000-66218800	Weak transcription	Colonic Mucosa	Colon
4	chr14:66201800-66219200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:66209400-66217400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:66209400-66217600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:66209400-66219200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:66209600-66217800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:66209600-66217800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr14:66209600-66219000	Weak transcription	Thymus	Thymus
11	chr14:66209600-66219200	Weak transcription	Stomach Mucosa	stomach
12	chr14:66210600-66217400	Weak transcription	GM12878-XiMat	blood
13	chr14:66210600-66217800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:66210800-66217400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:66211000-66218000	Weak transcription	Fetal Intestine Large	intestine
16	chr14:66211800-66217600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:66212400-66217800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:66212600-66217800	Weak transcription	HepG2	liver
19	chr14:66213400-66218000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:66213600-66217600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:66213600-66217800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:66215200-66217400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:66215600-66239800	Weak transcription	Primary T cells from cord blood	blood
24	chr14:66216600-66218000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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