Variant report

Variant	rs74059007
Chromosome Location	chr14:65671704-65671705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65665649..65668443-chr14:65670507..65672924,2	K562	blood:
2	chr14:65665995..65668443-chr14:65670507..65672680,2	K562	blood:
3	chr14:65670192..65672045-chr14:65675137..65676974,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55633216	0.83[AMR][1000 genomes]
rs58419427	1.00[AMR][1000 genomes]
rs59483989	1.00[AMR][1000 genomes]
rs74059004	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059011	1.00[AMR][1000 genomes]
rs74059013	0.83[AMR][1000 genomes]
rs74059017	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65669000-65673400	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:65670200-65672800	Enhancers	Primary B cells from cord blood	blood
3	chr14:65670200-65678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:65670400-65673200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:65670800-65671800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:65671000-65672200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:65671000-65672600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:65671000-65672600	Enhancers	Dnd41	blood
9	chr14:65671000-65672800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:65671000-65677400	Enhancers	Fetal Thymus	thymus
11	chr14:65671200-65672000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:65671200-65672800	Enhancers	Fetal Intestine Large	intestine
13	chr14:65671200-65672800	Enhancers	Fetal Intestine Small	intestine
14	chr14:65671200-65672800	Enhancers	Spleen	Spleen
15	chr14:65671200-65675800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr14:65671400-65672000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:65671400-65672000	Flanking Active TSS	HepG2	liver
18	chr14:65671400-65672200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:65671400-65672600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:65671400-65672800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:65671400-65673400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr14:65671400-65673600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:65671400-65675800	Enhancers	Primary hematopoietic stem cells	blood
24	chr14:65671600-65671800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr14:65671600-65672000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr14:65671600-65672000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr14:65671600-65672000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr14:65671600-65672200	Flanking Active TSS	GM12878-XiMat	blood
29	chr14:65671600-65672800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:65671600-65674000	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr14:65671600-65675800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr14:65671600-65678800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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