Variant report

Variant	rs74059011
Chromosome Location	chr14:65675297-65675298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65670192..65672045-chr14:65675137..65676974,2	K562	blood:
2	chr14:65674009..65676655-chr14:65879335..65881090,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55633216	0.83[AMR][1000 genomes]
rs58419427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59483989	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059004	1.00[AMR][1000 genomes]
rs74059006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059007	1.00[AMR][1000 genomes]
rs74059013	0.83[AMR][1000 genomes]
rs74059017	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74059024	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65670200-65678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65671000-65677400	Enhancers	Fetal Thymus	thymus
3	chr14:65671200-65675800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr14:65671400-65675800	Enhancers	Primary hematopoietic stem cells	blood
5	chr14:65671600-65675800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr14:65671600-65678800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:65671800-65675400	Enhancers	Duodenum Mucosa	Duodenum
8	chr14:65671800-65678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:65671800-65678800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:65672000-65675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:65672000-65675600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr14:65672000-65678400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr14:65672200-65681400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:65672600-65676200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:65673600-65675600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:65673600-65676200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:65673600-65677200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:65673800-65676200	Weak transcription	Brain Anterior Caudate	brain
20	chr14:65673800-65676400	Weak transcription	HSMM	muscle
21	chr14:65673800-65676600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr14:65673800-65676800	Weak transcription	HMEC	breast
23	chr14:65673800-65677000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:65673800-65677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:65673800-65677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:65673800-65677000	Weak transcription	NHDF-Ad	bronchial
27	chr14:65673800-65677000	Weak transcription	NHEK	skin
28	chr14:65673800-65677000	Weak transcription	NHLF	lung
29	chr14:65673800-65677200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr14:65674000-65675400	Enhancers	Primary T cells from cord blood	blood
31	chr14:65674000-65676600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:65674000-65676800	Weak transcription	Osteobl	bone
33	chr14:65674000-65677000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:65674000-65677000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:65674000-65677000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:65674000-65678800	Enhancers	Primary B cells from peripheral blood	blood
37	chr14:65674000-65678800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr14:65674000-65680000	Enhancers	Dnd41	blood
39	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
40	chr14:65674200-65676400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:65674200-65676800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:65674200-65676800	Weak transcription	NH-A	brain
43	chr14:65674200-65677000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:65674200-65678600	Enhancers	Primary B cells from cord blood	blood
45	chr14:65674400-65677000	Enhancers	GM12878-XiMat	blood
46	chr14:65674600-65675600	Enhancers	Fetal Intestine Small	intestine
47	chr14:65674600-65675800	Enhancers	Fetal Intestine Large	intestine
48	chr14:65674600-65677000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:65674800-65675600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr14:65674800-65675600	Enhancers	Stomach Mucosa	stomach

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