Variant report

Variant	rs74059024
Chromosome Location	chr14:65696747-65696748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65689494..65692237-chr14:65695472..65698101,2	K562	blood:
2	chr14:65694260..65697862-chr14:65826001..65829124,3	MCF-7	breast:
3	chr14:65695112..65697010-chr14:65821133..65822947,2	MCF-7	breast:
4	chr14:64969629..64971559-chr14:65694755..65697380,2	MCF-7	breast:
5	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
6	chr14:65696039..65697546-chr14:65753255..65754853,2	MCF-7	breast:
7	chr14:65696604..65698657-chr14:65706204..65708336,3	K562	blood:
8	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
9	chr14:65693679..65698667-chr14:65701405..65705460,7	MCF-7	breast:
10	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1256529	1.00[EUR][1000 genomes]
rs1256532	1.00[EUR][1000 genomes]
rs1256535	1.00[EUR][1000 genomes]
rs1256545	1.00[EUR][1000 genomes]
rs55791657	1.00[EUR][1000 genomes]
rs58419427	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59483989	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6573603	1.00[EUR][1000 genomes]
rs7144841	1.00[EUR][1000 genomes]
rs7157687	1.00[EUR][1000 genomes]
rs74056715	1.00[EUR][1000 genomes]
rs74056720	1.00[EUR][1000 genomes]
rs74059011	0.84[AFR][1000 genomes]
rs74059017	0.89[AFR][1000 genomes]
rs8004406	1.00[EUR][1000 genomes]
rs8014200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65691400-65697600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65691800-65698600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65693400-65696800	Weak transcription	Dnd41	blood
4	chr14:65693400-65704200	Weak transcription	Gastric	stomach
5	chr14:65694400-65696800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:65694400-65697000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:65695200-65697400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:65695400-65698800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:65695400-65699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:65696000-65696800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:65696000-65697000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:65696000-65697000	Active TSS	Right Atrium	heart
13	chr14:65696200-65696800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:65696200-65696800	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr14:65696200-65697000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr14:65696200-65697000	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr14:65696200-65697200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:65696200-65697200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:65696200-65697200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:65696200-65697200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:65696200-65697200	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr14:65696200-65697200	Active TSS	Colon Smooth Muscle	Colon
23	chr14:65696200-65697200	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr14:65696200-65697200	Enhancers	Fetal Brain Male	brain
25	chr14:65696200-65697200	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr14:65696200-65697400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:65696200-65697400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr14:65696200-65697400	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr14:65696200-65697400	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr14:65696200-65697400	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr14:65696200-65697400	Active TSS	Fetal Brain Female	brain
32	chr14:65696200-65697400	Enhancers	Fetal Heart	heart
33	chr14:65696200-65697400	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr14:65696200-65697400	Active TSS	Psoas Muscle	Psoas
35	chr14:65696200-65697400	Active TSS	Rectal Smooth Muscle	rectum
36	chr14:65696200-65697400	Flanking Active TSS	HUVEC	blood vessel
37	chr14:65696400-65696800	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr14:65696400-65696800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr14:65696400-65696800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr14:65696400-65696800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:65696400-65696800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:65696400-65696800	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr14:65696400-65696800	Active TSS	HSMMtube	muscle
44	chr14:65696400-65696800	Flanking Active TSS	K562	blood
45	chr14:65696400-65697000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr14:65696400-65697000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr14:65696400-65697000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr14:65696400-65697000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:65696400-65697000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr14:65696400-65697000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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