Variant report

Variant	rs74060807
Chromosome Location	chr12:11865925-11865926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11802553..11805174-chr12:11862801..11866673,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139083	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61366849	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11827400-11879800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:11838800-11872200	Weak transcription	Primary T cells from cord blood	blood
3	chr12:11841800-11867400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:11848000-11872200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:11848800-11879600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:11853000-11872000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:11853200-11870400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:11854800-11872600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:11855200-11871800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:11855400-11868200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr12:11857000-11876800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:11858600-11870400	Weak transcription	NHLF	lung
13	chr12:11859200-11872000	Weak transcription	HSMMtube	muscle
14	chr12:11860000-11867600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:11860000-11869800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:11860400-11871600	Weak transcription	Placenta	Placenta
17	chr12:11860600-11868400	Weak transcription	Fetal Intestine Large	intestine
18	chr12:11860600-11869400	Weak transcription	NH-A	brain
19	chr12:11860800-11869400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr12:11860800-11869400	Weak transcription	Esophagus	oesophagus
21	chr12:11860800-11869400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:11860800-11869600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:11860800-11869800	Weak transcription	Colonic Mucosa	Colon
24	chr12:11860800-11869800	Weak transcription	Fetal Kidney	kidney
25	chr12:11860800-11869800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:11860800-11870600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:11860800-11870600	Weak transcription	NHEK	skin
28	chr12:11860800-11871000	Weak transcription	Fetal Brain Male	brain
29	chr12:11860800-11871200	Weak transcription	Lung	lung
30	chr12:11861000-11869800	Weak transcription	HMEC	breast
31	chr12:11861200-11866200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr12:11861200-11866800	Weak transcription	Small Intestine	intestine
33	chr12:11861200-11872400	Strong transcription	Dnd41	blood
34	chr12:11861400-11866800	Weak transcription	Right Atrium	heart
35	chr12:11861400-11869400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr12:11861400-11869800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:11861600-11866800	Weak transcription	Right Ventricle	heart
38	chr12:11861600-11866800	Weak transcription	Thymus	Thymus
39	chr12:11861600-11867600	Weak transcription	Fetal Intestine Small	intestine
40	chr12:11861600-11868400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr12:11861600-11869800	Weak transcription	Fetal Stomach	stomach
42	chr12:11861600-11869800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr12:11861800-11866600	Genic enhancers	Primary hematopoietic stem cells	blood
44	chr12:11861800-11867200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:11861800-11869800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr12:11861800-11876200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:11862000-11872000	Weak transcription	HSMM	muscle
48	chr12:11863000-11867000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr12:11863000-11869800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr12:11863400-11869800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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