Variant report

Variant	rs74060936
Chromosome Location	chr14:73031128-73031129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:73029014..73031755-chr14:73034967..73036841,2	K562	blood:
2	chr14:73027080..73029915-chr14:73030581..73032149,2	MCF-7	breast:
3	chr14:73021238..73023214-chr14:73030820..73033592,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGS6-2	chr14:73030783-73033233	NONHSAT037652

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3742842	1.00[ASN][1000 genomes]
rs55889235	0.89[AMR][1000 genomes]
rs60376099	0.82[AFR][1000 genomes]
rs74060934	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv518320	chr14:73023436-73032103	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1047057	chr14:73024744-73221375	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:73012400-73032000	Weak transcription	Brain Germinal Matrix	brain
2	chr14:73026400-73034400	Weak transcription	Fetal Brain Male	brain
3	chr14:73026600-73031200	Weak transcription	Right Ventricle	heart
4	chr14:73026800-73031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:73026800-73031200	Weak transcription	Psoas Muscle	Psoas
6	chr14:73026800-73031800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:73027000-73039800	Weak transcription	Fetal Brain Female	brain
8	chr14:73027200-73031200	Weak transcription	Right Atrium	heart
9	chr14:73027200-73031400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:73027200-73033200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:73027400-73031600	Weak transcription	HSMMtube	muscle
12	chr14:73027400-73031800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:73027400-73032200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:73027800-73031200	Weak transcription	HSMM	muscle
15	chr14:73028000-73031400	Weak transcription	Fetal Heart	heart
16	chr14:73029200-73031800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:73029400-73031600	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:73030000-73031200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:73030000-73033800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:73030200-73033000	Enhancers	Left Ventricle	heart
21	chr14:73030200-73034000	Enhancers	Fetal Muscle Leg	muscle
22	chr14:73030200-73035200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:73030400-73035600	Enhancers	Fetal Stomach	stomach
24	chr14:73030800-73032800	Weak transcription	Primary B cells from cord blood	blood
25	chr14:73030800-73035600	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links