Variant report

Variant	rs3742842
Chromosome Location	chr14:73032750-73032751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:73021238..73023214-chr14:73030820..73033592,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGS6-2	chr14:73030783-73033233	NONHSAT037652

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10136417	1.00[MEX][hapmap]
rs17116077	1.00[MEX][hapmap]
rs17116098	1.00[MEX][hapmap]
rs17116719	1.00[MEX][hapmap]
rs74060934	1.00[ASN][1000 genomes]
rs74060936	1.00[ASN][1000 genomes]
rs8004385	0.82[YRI][hapmap]
rs8006716	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1047057	chr14:73024744-73221375	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:73026400-73034400	Weak transcription	Fetal Brain Male	brain
2	chr14:73027000-73039800	Weak transcription	Fetal Brain Female	brain
3	chr14:73027200-73033200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:73030000-73033800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr14:73030200-73033000	Enhancers	Left Ventricle	heart
6	chr14:73030200-73034000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:73030200-73035200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:73030400-73035600	Enhancers	Fetal Stomach	stomach
9	chr14:73030800-73032800	Weak transcription	Primary B cells from cord blood	blood
10	chr14:73030800-73035600	Enhancers	Fetal Muscle Trunk	muscle
11	chr14:73031200-73032800	Enhancers	Psoas Muscle	Psoas
12	chr14:73031200-73034200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:73031400-73034000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr14:73031600-73032800	Enhancers	HSMMtube	muscle
15	chr14:73031800-73033000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:73032000-73033200	Enhancers	Brain Germinal Matrix	brain
17	chr14:73032000-73034000	Weak transcription	Right Ventricle	heart
18	chr14:73032000-73035000	Weak transcription	Placenta	Placenta
19	chr14:73032200-73032800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:73032600-73033800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:73032600-73034000	Weak transcription	Fetal Heart	heart
22	chr14:73032600-73034200	Enhancers	Primary B cells from peripheral blood	blood
23	chr14:73032600-73041400	Weak transcription	Right Atrium	heart

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