Variant report

Variant	rs74063333
Chromosome Location	chr14:77808252-77808253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77806282..77808362-chr14:77841569..77843819,2	MCF-7	breast:
2	chr14:77786859..77789078-chr14:77806586..77808764,2	K562	blood:
3	chr14:77802533..77804704-chr14:77806659..77809069,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100580	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction
ENSG00000100583	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55717450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56091500	0.92[AFR][1000 genomes]
rs57356351	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57482101	1.00[AMR][1000 genomes]
rs58133038	1.00[AMR][1000 genomes]
rs58550666	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59556316	1.00[AMR][1000 genomes]
rs74063328	1.00[AMR][1000 genomes]
rs74063329	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063330	1.00[AMR][1000 genomes]
rs74063335	1.00[AMR][1000 genomes]
rs74063337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063340	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063341	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063344	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74065604	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77789200-77818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
3	chr14:77799400-77808800	Weak transcription	K562	blood
4	chr14:77801200-77810400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:77801200-77812600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:77801400-77810200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:77801400-77811200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:77801600-77810600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:77802000-77813000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr14:77802800-77810600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr14:77803000-77811000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:77803000-77811000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:77803200-77809000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:77803200-77810400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:77803600-77813000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:77804000-77808800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr14:77804200-77809400	Weak transcription	Hela-S3	cervix
19	chr14:77804200-77811400	Strong transcription	Primary B cells from cord blood	blood
20	chr14:77804400-77809600	Strong transcription	Brain Anterior Caudate	brain
21	chr14:77804400-77811400	Strong transcription	Primary hematopoietic stem cells	blood
22	chr14:77804600-77810800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:77804600-77811000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:77804800-77810200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:77804800-77811400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:77805000-77809200	Weak transcription	Fetal Brain Male	brain
27	chr14:77805200-77810000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:77805200-77813000	Strong transcription	Fetal Intestine Large	intestine
29	chr14:77805200-77818600	Weak transcription	Small Intestine	intestine
30	chr14:77805400-77808800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:77805400-77810800	Strong transcription	GM12878-XiMat	blood
32	chr14:77805400-77811000	Strong transcription	Primary T cells from cord blood	blood
33	chr14:77805400-77811200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:77805400-77812800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:77805600-77809200	Weak transcription	HUVEC	blood vessel
36	chr14:77805600-77809800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:77805600-77810800	Strong transcription	Left Ventricle	heart
38	chr14:77805600-77811000	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr14:77805600-77811000	Strong transcription	Pancreas	Pancrea
40	chr14:77805800-77808800	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:77805800-77809000	Strong transcription	Fetal Muscle Leg	muscle
42	chr14:77805800-77810000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr14:77805800-77810000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:77805800-77810800	Strong transcription	Fetal Stomach	stomach
45	chr14:77805800-77811000	Strong transcription	Fetal Thymus	thymus
46	chr14:77805800-77811200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:77805800-77813200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr14:77806000-77808400	Strong transcription	HepG2	liver
49	chr14:77806000-77808600	Strong transcription	NHEK	skin
50	chr14:77806000-77809000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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