Variant report

Variant	rs74063335
Chromosome Location	chr14:77810086-77810087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77802289..77805136-chr14:77808966..77810650,2	K562	blood:
2	chr14:77809100..77810943-chr14:77811490..77814273,2	MCF-7	breast:
3	chr14:77808718..77810502-chr14:77813524..77815193,2	K562	blood:
4	chr14:77809184..77811405-chr14:77842213..77844596,2	MCF-7	breast:
5	chr14:77808493..77810636-chr14:77812936..77815914,3	K562	blood:
6	chr14:77803636..77806540-chr14:77808690..77810650,2	K562	blood:

Variant related genes	Relation type
ENSG00000100580	Chromatin interaction
ENSG00000100583	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55717450	1.00[AMR][1000 genomes]
rs57356351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57482101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58133038	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58550666	1.00[AMR][1000 genomes]
rs59556316	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063328	1.00[AMR][1000 genomes]
rs74063329	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063330	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74063333	1.00[AMR][1000 genomes]
rs74063337	1.00[AMR][1000 genomes]
rs74063338	1.00[AMR][1000 genomes]
rs74063339	1.00[AMR][1000 genomes]
rs74063340	1.00[AMR][1000 genomes]
rs74063341	1.00[AMR][1000 genomes]
rs74063344	1.00[AMR][1000 genomes]
rs74065604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77789200-77818200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:77793200-77824600	Weak transcription	Psoas Muscle	Psoas
3	chr14:77801200-77810400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:77801200-77812600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:77801400-77810200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr14:77801400-77811200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:77801600-77810600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:77802000-77813000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr14:77802800-77810600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:77803000-77811000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:77803000-77811000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:77803200-77810400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:77803600-77813000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:77803800-77835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:77804200-77811400	Strong transcription	Primary B cells from cord blood	blood
16	chr14:77804400-77811400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr14:77804600-77810800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:77804600-77811000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:77804800-77810200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:77804800-77811400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:77805200-77813000	Strong transcription	Fetal Intestine Large	intestine
22	chr14:77805200-77818600	Weak transcription	Small Intestine	intestine
23	chr14:77805400-77810800	Strong transcription	GM12878-XiMat	blood
24	chr14:77805400-77811000	Strong transcription	Primary T cells from cord blood	blood
25	chr14:77805400-77811200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:77805400-77812800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:77805600-77810800	Strong transcription	Left Ventricle	heart
28	chr14:77805600-77811000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr14:77805600-77811000	Strong transcription	Pancreas	Pancrea
30	chr14:77805800-77810800	Strong transcription	Fetal Stomach	stomach
31	chr14:77805800-77811000	Strong transcription	Fetal Thymus	thymus
32	chr14:77805800-77811200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:77805800-77813200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr14:77806000-77810200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:77806000-77810200	Strong transcription	Ovary	ovary
36	chr14:77806000-77810600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:77806000-77810600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr14:77806000-77810600	Strong transcription	Fetal Muscle Trunk	muscle
39	chr14:77806000-77811000	Strong transcription	Dnd41	blood
40	chr14:77806000-77811200	Strong transcription	Liver	Liver
41	chr14:77806200-77810200	Strong transcription	Aorta	Aorta
42	chr14:77806200-77810200	Strong transcription	Brain Germinal Matrix	brain
43	chr14:77806200-77810800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr14:77806200-77811000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr14:77806200-77811000	Strong transcription	Lung	lung
46	chr14:77806200-77811000	Strong transcription	Spleen	Spleen
47	chr14:77806200-77812000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:77806200-77812800	Strong transcription	Thymus	Thymus
49	chr14:77806200-77819400	Weak transcription	A549	lung
50	chr14:77806400-77810400	Strong transcription	Colonic Mucosa	Colon

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