Variant report

Variant	rs74067989
Chromosome Location	chr14:79752191-79752192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17109019	0.89[AFR][1000 genomes]
rs61387635	1.00[AFR][1000 genomes]
rs74067969	0.96[AFR][1000 genomes]
rs74067991	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79745400-79753600	Active TSS	Stomach Smooth Muscle	stomach
2	chr14:79747800-79759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:79749400-79756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:79750000-79756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:79750200-79760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:79751400-79759600	Weak transcription	Brain Germinal Matrix	brain
7	chr14:79751600-79752200	Weak transcription	Aorta	Aorta
8	chr14:79751600-79752400	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:79752000-79754200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links