Variant report

Variant	rs17109019
Chromosome Location	chr14:79744217-79744218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1868636	1.00[AMR][1000 genomes]
rs60679807	1.00[AMR][1000 genomes]
rs61387635	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153825	1.00[AMR][1000 genomes]
rs7161402	1.00[AMR][1000 genomes]
rs74067963	1.00[AMR][1000 genomes]
rs74067968	1.00[AMR][1000 genomes]
rs74067969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067989	0.89[AFR][1000 genomes]
rs74067991	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067995	1.00[AMR][1000 genomes]
rs74067998	1.00[AMR][1000 genomes]
rs74069723	1.00[AMR][1000 genomes]
rs74069731	1.00[AMR][1000 genomes]
rs74069736	1.00[AMR][1000 genomes]
rs7493155	1.00[YRI][hapmap]
rs8004460	1.00[ASW][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv528346	chr14:79683956-79747251	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79744000-79744600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:79744000-79744600	Bivalent Enhancer	Brain Hippocampus Middle	brain
3	chr14:79744000-79744600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
4	chr14:79744000-79745000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:79744200-79744600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:79744200-79744600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:79744200-79744600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr14:79744200-79744600	Enhancers	Brain Angular Gyrus	brain
9	chr14:79744200-79744600	Bivalent Enhancer	Brain Germinal Matrix	brain
10	chr14:79744200-79744600	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:79744200-79744600	Bivalent Enhancer	Brain Substantia Nigra	brain
12	chr14:79744200-79744600	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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