Variant report

Variant	rs7161402
Chromosome Location	chr14:79751529-79751530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17109013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109019	1.00[AMR][1000 genomes]
rs17109025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122435	0.97[ASN][1000 genomes]
rs2197994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887910	0.97[ASN][1000 genomes]
rs60679807	1.00[AMR][1000 genomes]
rs61387635	1.00[AMR][1000 genomes]
rs6574503	1.00[ASN][1000 genomes]
rs6574504	1.00[ASN][1000 genomes]
rs7153825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715697	1.00[ASN][1000 genomes]
rs7159701	0.97[ASN][1000 genomes]
rs7159954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161108	1.00[ASN][1000 genomes]
rs74067962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067963	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067969	1.00[AMR][1000 genomes]
rs74067991	1.00[AMR][1000 genomes]
rs74067995	1.00[AMR][1000 genomes]
rs74067998	1.00[AMR][1000 genomes]
rs74067999	0.97[ASN][1000 genomes]
rs74069723	1.00[AMR][1000 genomes]
rs74069726	0.97[ASN][1000 genomes]
rs74069728	0.97[ASN][1000 genomes]
rs74069731	1.00[AMR][1000 genomes]
rs74069736	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7494074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004460	1.00[AMR][1000 genomes]
rs8005044	0.97[ASN][1000 genomes]
rs8005937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014560	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79745400-79753600	Active TSS	Stomach Smooth Muscle	stomach
2	chr14:79745600-79752000	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr14:79747800-79759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:79749200-79752000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:79749400-79756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:79750000-79756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:79750200-79760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:79750800-79751600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:79750800-79751600	Active TSS	Fetal Stomach	stomach
10	chr14:79751000-79751600	Enhancers	Colon Smooth Muscle	Colon
11	chr14:79751200-79751600	Bivalent Enhancer	Fetal Brain Male	brain
12	chr14:79751400-79751600	Enhancers	Fetal Intestine Large	intestine
13	chr14:79751400-79751800	Active TSS	Rectal Smooth Muscle	rectum
14	chr14:79751400-79759600	Weak transcription	Brain Germinal Matrix	brain

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