Variant report

Variant	rs8005937
Chromosome Location	chr14:79764278-79764279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11159402	1.00[YRI][hapmap]
rs17109013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109025	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122435	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs2197994	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2887910	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs6574503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6574504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7153825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715697	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7159701	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs7159954	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161108	1.00[ASN][1000 genomes]
rs7161402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067999	0.97[ASN][1000 genomes]
rs74069726	0.97[ASN][1000 genomes]
rs74069728	0.97[ASN][1000 genomes]
rs74069736	0.84[ASN][1000 genomes]
rs7494074	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005044	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs8005957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007640	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014036	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8014560	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79756200-79768600	Weak transcription	Aorta	Aorta
2	chr14:79760400-79765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:79760400-79765800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:79760400-79767600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:79760400-79770400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:79762000-79764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:79762800-79770800	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:79763400-79764400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links