Variant report

Variant	rs2122435
Chromosome Location	chr14:79792688-79792689
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79792537..79795369-chr14:79800633..79803440,2	MCF-7	breast:
2	chr14:79792610..79795331-chr14:79808836..79811275,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12884217	0.82[YRI][hapmap]
rs17109013	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs17109025	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs1868636	0.97[ASN][1000 genomes]
rs2197994	0.97[ASN][1000 genomes]
rs2218785	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs2887896	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2887910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574503	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6574504	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153825	0.97[ASN][1000 genomes]
rs7153826	0.97[ASN][1000 genomes]
rs715697	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159701	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159954	0.97[ASN][1000 genomes]
rs7161108	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7161402	0.97[ASN][1000 genomes]
rs74067962	0.97[ASN][1000 genomes]
rs74067963	0.97[ASN][1000 genomes]
rs74067965	0.97[ASN][1000 genomes]
rs74067967	0.97[ASN][1000 genomes]
rs74067968	0.97[ASN][1000 genomes]
rs74067999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74069726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74069728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74069736	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7494074	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs8005044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005937	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs8005957	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs8007640	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs8014036	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs8014560	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79782800-79798400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr14:79784800-79798800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:79790600-79795000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:79791000-79797200	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:79791400-79792800	Enhancers	Fetal Brain Female	brain
6	chr14:79791800-79795000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:79791800-79798400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:79792200-79795400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:79792200-79825600	Weak transcription	Aorta	Aorta

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