Variant report

Variant	rs12884217
Chromosome Location	chr14:79770232-79770233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10498537	0.82[CHD][hapmap]
rs11627269	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs11628045	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1184263	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12432262	0.91[CEU][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs12882688	0.87[CEU][hapmap]
rs12882872	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12888606	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12895906	0.84[CHD][hapmap]
rs1868635	0.95[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs2122435	0.82[YRI][hapmap]
rs2218786	0.85[AMR][1000 genomes]
rs2219846	0.81[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2370974	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4359363	0.93[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4899737	0.91[CEU][hapmap];0.81[CHB][hapmap];0.85[TSI][hapmap]
rs4899738	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56711325	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61995413	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6574505	1.00[ASW][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7153957	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs7161543	0.91[CEU][hapmap];0.85[CHB][hapmap];0.89[TSI][hapmap]
rs7492515	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8014036	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79760400-79770400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:79762800-79770800	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:79765800-79773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:79769000-79770400	Weak transcription	Aorta	Aorta

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