Variant report

Variant	rs11628045
Chromosome Location	chr14:79750484-79750485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12432262	0.83[EUR][1000 genomes]
rs12882872	0.85[EUR][1000 genomes]
rs12884217	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1868635	0.91[EUR][1000 genomes]
rs2218786	0.80[AMR][1000 genomes]
rs2370974	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4359363	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899738	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56711325	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61995413	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6574505	0.82[AMR][1000 genomes]
rs7492515	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79745400-79753600	Active TSS	Stomach Smooth Muscle	stomach
2	chr14:79745600-79752000	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr14:79747800-79751000	Weak transcription	Brain Germinal Matrix	brain
4	chr14:79747800-79759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:79749200-79752000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:79749400-79750800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:79749400-79750800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:79749400-79751000	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:79749400-79756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:79750000-79750800	Weak transcription	Fetal Stomach	stomach
11	chr14:79750000-79756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:79750200-79750800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:79750200-79760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:79750400-79750800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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